Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttctattctgttttggcagcgaatttgacaggaagaaaacattgcagGTGGTTGGGACCCCAAATTATATGTGCCCGGAACTTCTTGCCGACATCCCATATGGCTTCAAATCAGATATATGGTCGTTAG

Basic information

species Selaginella moellendorffii
transcript EFJ32716
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ32716 (Selaginella moellendorffii), 3'ss of exon 8
lower sequence: GRMZM2G074262_T01 (Zea mays), 3'ss of exon 9
----------------------------------------------------------------------------------------------------------------------------------------------gtaagtt--ctattctgttttggcagcgaatttgacaggaagaaaacattgcagGTGGTTGGGACCCCAAATTATATGTGCCCGGAACTTCTTGCCGACATCCCATATGGCTTCAAATCAGATATATGGTCGTTAG
                                                                                                                                              || ||||  ||  |||| | |   |      |   |  |||  |        |||| || || || ||||||||||||||||| ||  | ||| | ||||| || ||||| ||||| ||||||||||||||  | |
gtagccttttttctcttatttcttttgtttcttgcttgaaaatttgtccttcatttctgtttttgtttcatattctaaaatcctaatgaaaacaggaaccacatgtttgactaattcatgtctgtttttctgctttcattatgttagttgccttgtctgctctcagaatcttatgttctagaatgatgttccttagGTTGTGGGAACACCAAATTATATGTGCCCAGAGTTGCTTACAGACATTCCCTATGGATTCAAGTCAGATATATGGTCTCTTG

upper sequence: EFJ32716 (Selaginella moellendorffii), 3'ss of exon 8
lower sequence: GLYMA12G31330.1 (Glycine max), 3'ss of exon 8
-------------------------------------------------gtaagttctattctgttttggcagcgaatttgacaggaagaaaacat-tgcagGTGGTTGGGACCCCAAATTATATGTGCCCGGAACTTCTTGCCGACATCCCATATGGCTTCAAATCAGATATATGGTCGTTAG
                                                  |  |   |     ||| ||| ||  ||||   | | ||  |    | |||||||||| || || || || |||||||| || ||||||||||| || || || ||||| |||||||| ||||| |||||  |||
tataatatgacattggtaccatattattagcattgtgtttatttcataaatgtgcagttactggttgtggaagttaatt--gctgtaaatatttgtgtgcagGTGGTAGGAACTCCCAACTATATGTGTCCTGAACTTCTTGCAGATATTCCTTATGGATTCAAATCTGATATTTGGTCACTAG

upper sequence: EFJ32716 (Selaginella moellendorffii), 3'ss of exon 8
lower sequence: AT3G44200.1 (Arabidopsis thaliana), 3'ss of exon 8
--------------------------------------------gtaagttctattctgttttggcagcgaatttgacaggaagaaaacattgca----gGTGGTTGGGACCCCAAATTATATGTGCCCGGAACTTCTTGCCGACATCCCATATGGCTTCAAATCAGATATATGGTCGTTAG
                                             |||    || | || |     |  |  |||   |   |   ||  ||  |    ||| ||||| || ||||| || |||||||||||||| ||||| || ||||| ||||| || || |||||||| ||||| ||||
tccataatgattattattcttaggattgctctcaagcttctgaactaatacttagtgtgatagaaaatggtgtttatgactcatggaattttatatttagGTTGTTGGAACTCCAAACTACATGTGCCCGGAACTGCTTGCTGATATCCCTTATGGTTTTAAGTCAGATATCTGGTCCTTAG

upper sequence: EFJ32716 (Selaginella moellendorffii), 3'ss of exon 8
lower sequence: Vv06s0009g00690.t01 (Vitis vinifera), 3'ss of exon 8
---------------------------------------------gtaagttc---tattctgttttggcagcgaatttgacaggaagaaaacattgcagGTGGTTGGGACCCCAAATTATATGTGCCCGGAACTTCTTGCCGACATCCCATATGGCTTCAAATCAGATATATGGTCGTTAG
                                             |||| ||     | |  |    |    |  |||        |   |      ||||| ||||| || || ||||| ||||| || ||||||||||| || || || |||||||||||||| ||||| |||||  |||
gttgaaatcttgcctgtgcttgtcctgttgatattcacggacttggtaaatttgagcaatgggacacgctcacctattcatttcctacttatgtgcacagGTAGTTGGAACTCCCAATTACATGTGTCCTGAACTTCTTGCAGATATTCCTTATGGCTTCAAATCTGATATCTGGTCTCTAG

upper sequence: EFJ32716 (Selaginella moellendorffii), 3'ss of exon 8
lower sequence: PP1S22_216V6.1 (Physcomitrella patens), 3'ss of exon 8
-----------------------------------------------------------------------------------------------gtaagtt---ctattctgttttggcagcgaatttgacaggaagaaaacattgcagGTGGTTGGGACCCCAAATTATATGTGCCCGGAACTTCTTGCCGACATCCCATATGGCTTCAAATCAGATATATGGTCGTTAG
                                                                                               | |||||   | || |  |  |||| | |||  || | |         ||||||||| || || || |||||||| ||||| || || || ||||| |||||||||||||| ||||||||||| || ||||| ||||
gtaagtaatccgttgtgaacctcgtatcatttgcattggaatgatgatcgctgctgtgaatagtttttaccatctcgcggtcgtactgttcgtttggaagttaatcaatccactaatggccg-gaacgtg-ctgcttcttgctattgcagGTAGTAGGCACTCCAAATTACATGTGTCCAGAGCTACTTGCAGACATCCCATATGGATTCAAATCAGACATTTGGTCATTAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaagttctattctgttttggcagcgaatttgacaggaagaaaacattgcagGTGGTTGGGACCCCAAATTATATGTGCCCGGAACTTCTTGCCGACATCCCATATGGCTTCAAATCAGATATATGGTCGTTAG
                              atttgac  putative branch site (score: 4)
                                              aaaacatt  TA-rich tract