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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgctcttttatgttcagagagagttttgtacccttctctttagattttatgctctaatcgctctcttttgtgaacagggacaagCCGTCGAGGGGAGACCACCCTGGGAAGGA

Basic information

species Selaginella moellendorffii
transcript EFJ32148
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169047026|gb|FE455911.1|FE455911
EST:     CCGTCTCTTGGCTCACAGGGACAAG                         CCGTCGAGGGGAGACCACCCTGGGAAGGA
genomic: CCGTCTCTTGGCTCACAGG--CAA-gtgctctttt ... cagggacaagCCGTCGAGGGGAGACCACCCTGGGAAGGA
EST: gi|169047026|gb|FE455911.1|FE455911
EST:     CCGTCTCTTGGCTCACAGGGACAAG                         CCGTCGAGGGGAGACCACCCTGGGAAGGA
genomic: CCGTCTCTTGGCTCACAGG--CAA-gtgctctttt ... cagggacaagCCGTCGAGGGGAGACCACCCTGGGAAGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acccttctctttagattttatgctctaatcgctctcttttgtgaacagggacaagCCGTCGAGGGGAGACCACCCTGGGAAGGA
                      ctctaat  putative branch site (score: 3)
       tctttagattttat  TA-rich tract