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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatacagtgctccattagttctcttctaataccatttacctgcagGAAATATTCGTGTTTACTGCCGTGTTAGACCTTTTCTTGTTGGTCAGAAAGATCAAGGGACTTGCGTTGATTTTGTTGGTCAAAACGGGGAAATCATGGT

Basic information

species Selaginella moellendorffii
transcript EFJ30678
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169097707|gb|FE499293.1|FE499293
EST:     CGTTCTTGCAGAGAATCGCAAGCTGTATAATGAAGTACAGGACTTGAAGG                         GAAATATTCGTGTTTACTGCCGTGTTAGACCTTTTCTTGTTGGTCAGAAAG
genomic: CGTTCTTGCAGAGAATCGCAAGCTGTATAATGAAGTACAGGACTTGAAGGgtatacagtg ... ttacctgcagGAAATATTCGTGTTTACTGCCGTGTTAGACCTTTTCTTGTTGGTCAGAAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtatacagtgctccattagttctcttctaataccatttacctgcagGAAATATTCGTGTTTACTGCCGTGTTAGACCTTTTCTTGTTGGTCAGAAAGATCAAGGGACTTGCGTTGATTTTGTTGGTCAAAACGGGGAAATCATGGT
                                 ttctaat  putative branch site (score: 2)
                                            tttacct  putative PPT
                                 ttctaata  TA-rich tract