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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgtgtgcgaatctcgaggcttgaccagagctgattcttttctcacagGGTAAAATTCCACTCGTTGGCTGTGGCGGTATAAGCAG

Basic information

species Selaginella moellendorffii
transcript EFJ30613
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169045575|gb|FE452536.1|FE452536
EST:     TGTTCACCTTATCCACGGAGGTTCTTCGAGAAATGTACCAGCTTACGTGG                         GGTAAAATTCCACTCGTTGGCTGTGGCGGTATAAGCAG
genomic: TGTTCACCTTATCCACGGAGGTTCTTCGAGAAATGTACCAGCTTACGTGGgtgagtgtgt ... tttctcacagGGTAAAATTCCACTCGTTGGCTGTGGCGGTATAAGCAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgagtgtgtgcgaatctcgaggcttgaccagagctgattcttttctcacagGGTAAAATTCCACTCGTTGGCTGTGGCGGTATAAGCAG
                                   agctgat  putative branch site (score: 4)
                                     ctgattcttttctc  CT-rich tract
                                        attctttt  TA-rich tract