1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaagcttcggtacattttctccttccgatctccatgatcttgactggcaaatcactttcagCGGTGGGGAACCTGAGCGTCGCCTAGCGATTTATGTGGGAAGACTGGGAGTCGAGAAGAACCTGGAGTTCTTGTACAA
species | Selaginella moellendorffii |
transcript | EFJ29760 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GATAGATTCCATCCTCGATATAAAAGTGACGCTATGAGAAACCGGCTCAC CGGTGGGGAACCTGAGCGTCGCCTAGCGATTTATGTGGGAAGACTGGGAGTEST: gi|169102949|gb|FE505314.1|FE505314
genomic: GATAGATTCCATCCTCGATATAAAAGTGACGCTATGAGAAACCGGCTCACgtaagcttcg ... tcactttcagCGGTGGGGAACCTGAGCGTCGCCTAGCGATTTATGTGGGAAGACTGGGAGT
EST: GATAGATTCCATCCTCGATATAAAAGTGACGCTATGAGAAACCGGCTCAC CGGCGGGGAACCTGAGCGTCGCCTAGCGATTTATGTGGGAAGACTGGGAGT
genomic: GATAGATTCCATCCTCGATATAAAAGTGACGCTATGAGAAACCGGCTCACgtaagcttcg ... tcactttcagCGGTGGGGAACCTGAGCGTCGCCTAGCGATTTATGTGGGAAGACTGGGAGT
tcggtacattttctccttccgatctccatgatcttgactggcaaatcactttcagCGGTGGGGAACCTGAGCGTCGCCTAGCGATTTATGTGGGAAGACTGGGAGTCGAGAAGAACCTGGAGTTCTTGTACAA
tcttgac putative branch site (score: 7)
tcactttc putative PPT
acatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcttcggtacattttctccttccgatctccatgatcttgactggcaaatcactttcagCGGTGGGGAACCTGAGCGTCGCCTAGCGATTTATGTGGGAAGACTGGGAGTCGAGAAGAACCTGGAGTTCTTGTACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC