1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtacaacttttcagtttccttgaagcgttcatgcttaattgggtttttttgtgaagGTTGACGAGAGGGGCATGAGATGGTTCTACACTGGTGACATTGGACAGTTCCATCCCGATGGTTGCCTGGAAATTGTAGACCGGAAGAAGGACATTGTTA
species | Selaginella moellendorffii |
transcript | EFJ27012 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTACATTGGGATACTTCAAGAACCAGGGGAAGACGGATGAAGATTACAAG GTTGACGAGAGGGGCATGAGATGGTTCTACACTGGTGACATTGGACAATTCEST: gi|169020952|gb|FE429339.1|FE429339
genomic: TTACATTGGGATACTTCAAGAACCAGGGGAAGACGGATGAAGATTACAAGgtacaacttt ... ttttgtgaagGTTGACGAGAGGGGCATGAGATGGTTCTACACTGGTGACATTGGACAGTTC
EST: TTACATTGGGATACTTCAAGAACCAGGGGAAGACGGATGAAGATTACAAG GTTGACGAGAGGGGCATGAGATGGTTCTACACTGGTGACATTGGACAATTCEST: gi|169114439|gb|FE516312.1|FE516312
genomic: TTACATTGGGATACTTCAAGAACCAGGGGAAGACGGATGAAGATTACAAGgtacaacttt ... ttttgtgaagGTTGACGAGAGGGGCATGAGATGGTTCTACACTGGTGACATTGGACAGTTC
EST: TTACATTGGGATACTTCAAGAACCAGGGGAAGACGGATGAAGATTACAAG GTTGACGAGAGGGGCATGAGATGGTTCTACACTGGTGACATTGGACAATTCEST: gi|169092854|gb|FE494979.1|FE494979
genomic: TTACATTGGGATACTTCAAGAACCAGGGGAAGACGGATGAAGATTACAAGgtacaacttt ... ttttgtgaagGTTGACGAGAGGGGCATGAGATGGTTCTACACTGGTGACATTGGACAGTTC
EST: TTACATTGGGATACTTCAAGAACCAGGGGAAGACGGATGAAGATTACAAG GTTGACGAGAGGGGCATGAGATGGTTCTACACTGGTGACATTGGACAATTCEST: gi|169114438|gb|FE516311.1|FE516311
genomic: TTACATTGGGATACTTCAAGAACCAGGGGAAGACGGATGAAGATTACAAGgtacaacttt ... ttttgtgaagGTTGACGAGAGGGGCATGAGATGGTTCTACACTGGTGACATTGGACAGTTC
EST: TTACATTGGGATACTTCAAGAACCAGGGGAAGACGGATGAAGATTACAAG GTTGACGAGAGGGGCATGAGATGGTTCTACACTGGTGACATTGGACAATTCEST: gi|169020906|gb|FE431984.1|FE431984
genomic: TTACATTGGGATACTTCAAGAACCAGGGGAAGACGGATGAAGATTACAAGgtacaacttt ... ttttgtgaagGTTGACGAGAGGGGCATGAGATGGTTCTACACTGGTGACATTGGACAGTTC
EST: TTACATTGGGATACTTCAAGAACCAGGGGAAGACGGATGAAGATTACAAG GTTGACGAGAGGGGCATGAGATGGTTCTACACTGGTGACATTGGACAATTCEST: gi|169053814|gb|FE462894.1|FE462894
genomic: TTACATTGGGATACTTCAAGAACCAGGGGAAGACGGATGAAGATTACAAGgtacaacttt ... ttttgtgaagGTTGACGAGAGGGGCATGAGATGGTTCTACACTGGTGACATTGGACAGTTC
EST: TTACATTGGGATACTTCAAGAACCAGGGGAAGACGGATGAAGATTACAAG GTTGACGAGAGGGGCATGAGATGGTTCTACACTGGTGACATTGGACAATTCEST: gi|169068347|gb|FE479171.1|FE479171
genomic: TTACATTGGGATACTTCAAGAACCAGGGGAAGACGGATGAAGATTACAAGgtacaacttt ... ttttgtgaagGTTGACGAGAGGGGCATGAGATGGTTCTACACTGGTGACATTGGACAGTTC
EST: TTACATTGGGATACTTCAAGAACCAGGGGAAGACGGATGAAGATTACAAG GTTGACGAGAGGGGCATGAGATGGTTCTACACTGGTGACATTGGACAATTCEST: gi|169071984|gb|FE478193.1|FE478193
genomic: TTACATTGGGATACTTCAAGAACCAGGGGAAGACGGATGAAGATTACAAGgtacaacttt ... ttttgtgaagGTTGACGAGAGGGGCATGAGATGGTTCTACACTGGTGACATTGGACAGTTC
EST: TTACATTGGGATACTTCAAGAACCAGGGGAAGACGGATGAAGATTACAAG GTTGACGAGAGGGGCATGAGATGGTTCTACACTGGTGACATTGGACAATTCEST: gi|169092855|gb|FE494980.1|FE494980
genomic: TTACATTGGGATACTTCAAGAACCAGGGGAAGACGGATGAAGATTACAAGgtacaacttt ... ttttgtgaagGTTGACGAGAGGGGCATGAGATGGTTCTACACTGGTGACATTGGACAGTTC
EST: TTACATTGGGATACTTCAAGAACCAGGGGAAGACGGATGAAGATTACAAG GTTGACGAGAGGGGCATGAGATGGTTCTACACTGGTGACATTGGACAATTCEST: gi|169071983|gb|FE478192.1|FE478192
genomic: TTACATTGGGATACTTCAAGAACCAGGGGAAGACGGATGAAGATTACAAGgtacaacttt ... ttttgtgaagGTTGACGAGAGGGGCATGAGATGGTTCTACACTGGTGACATTGGACAGTTC
EST: TTACATTGGGATACTTCAAGAACCAGGGGAAGACGGATGAAGATTACAAG GTTGACGAGAGGGGCATGAGATGGTTCTACACTGGTGACATTGGACAATTC
genomic: TTACATTGGGATACTTCAAGAACCAGGGGAAGACGGATGAAGATTACAAGgtacaacttt ... ttttgtgaagGTTGACGAGAGGGGCATGAGATGGTTCTACACTGGTGACATTGGACAGTTC
tacaacttttcagtttccttgaagcgttcatgcttaattgggtttttttgtgaagGTTGACGAGAGGGGCATGAGATGGTTCTACACTGGTGACATTGGACAGTTCCATCCCGATGGTTGCCTGGAAATTGTAGACCGGAAGAAGGACATTGTTA
gcttaat putative branch site (score: 18)
tttttttgt putative PPT
tttttttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacaacttttcagtttccttgaagcgttcatgcttaattgggtttttttgtgaagGTTGACGAGAGGGGCATGAGATGGTTCTACACTGGTGACATTGGACAGTTCCATCCCGATGGTTGCCTGGAAATTGTAGACCGGAAGAAGGACATTGTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG