1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtacaacttttcagtttccttgaagcgttcatgtttaattcgtttttttgtgaagGTTGACGAGAGGGGCATGAGATGGTTCTACACTGGTGACATTGGACAATTCCATCCCGATGGTTGCTTAGAAATTGTAGACCGGAAGAAGGACATTGTTA
species | Selaginella moellendorffii |
transcript | EFJ26722 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTACATTGGGATACTTCAAGAACCAGGGGAAGACGGATGAAGATTACAAG GTTGACGAGAGGGGCATGAGATGGTTCTACACTGGTGACATTGGACAGTTCEST: gi|169098530|gb|FE498534.1|FE498534
genomic: TTACATTGGGATACTTCAAGAACCAGGGGAAGACGGATGAAGATTACAAGgtacaacttt ... ttttgtgaagGTTGACGAGAGGGGCATGAGATGGTTCTACACTGGTGACATTGGACAATTC
EST: TTACATTGGGATACTTCAAGAACCAGGGGAAGACGGATGAAGATTACAAG GTTGACGAGAGGGGCATGAGATGGTTCTACACTGGTGACATTGGACAGTTCEST: gi|169102589|gb|FE508568.1|FE508568
genomic: TTACATTGGGATACTTCAAGAACCAGGGGAAGACGGATGAAGATTACAAGgtacaacttt ... ttttgtgaagGTTGACGAGAGGGGCATGAGATGGTTCTACACTGGTGACATTGGACAATTC
EST: TTACATTGGGATACTTCAAGAACCAGGGGAAGACGGATGAAGATTACAAG GTTGACGAGAGGGGCATGAGATGGTTCTACACTGGTGACATTGGACAGTTCEST: gi|169020953|gb|FE429340.1|FE429340
genomic: TTACATTGGGATACTTCAAGAACCAGGGGAAGACGGATGAAGATTACAAGgtacaacttt ... ttttgtgaagGTTGACGAGAGGGGCATGAGATGGTTCTACACTGGTGACATTGGACAATTC
EST: TTACATTGGGATACTTCAAGAACCAGGGGAAGACGGATGAAGATTACAAG GTTGACGAGAGGGGCATGAGATGGTTCTACACTGGTGACATTGGACAATTCEST: gi|169062086|gb|FE469678.1|FE469678
genomic: TTACATTGGGATACTTCAAGAACCAGGGGAAGACGGATGAAGATTACAAGgtacaacttt ... ttttgtgaagGTTGACGAGAGGGGCATGAGATGGTTCTACACTGGTGACATTGGACAATTC
EST: TTACATTGGGATACTTCAAGAACCAGGGGAAGACGGATGAAGATTACAAG GTTGACGAGAGGGGCATGAGATGGTTCTACACTGGTGACATTGGACAGTTCEST: gi|169081832|gb|FE487445.1|FE487445
genomic: TTACATTGGGATACTTCAAGAACCAGGGGAAGACGGATGAAGATTACAAGgtacaacttt ... ttttgtgaagGTTGACGAGAGGGGCATGAGATGGTTCTACACTGGTGACATTGGACAATTC
EST: TTACATTGGGATACTTCAAGAACCAGGGGAAGACGGATGAAGATTACAAG GTTGACGAGAGGGGCATGAGATGGTTCTACACTGGTGACATTGGACAGTTCEST: gi|169088887|gb|FE492865.1|FE492865
genomic: TTACATTGGGATACTTCAAGAACCAGGGGAAGACGGATGAAGATTACAAGgtacaacttt ... ttttgtgaagGTTGACGAGAGGGGCATGAGATGGTTCTACACTGGTGACATTGGACAATTC
EST: TTACATTGGGATACTTCAAGAACCAGGGGAAGACGGATGAAGATTACAAG GTTGACGAGAGGGGCATGAGATGGTTCTACACTGGTGACATTGGACAGTTCEST: gi|169098740|gb|FE500252.1|FE500252
genomic: TTACATTGGGATACTTCAAGAACCAGGGGAAGACGGATGAAGATTACAAGgtacaacttt ... ttttgtgaagGTTGACGAGAGGGGCATGAGATGGTTCTACACTGGTGACATTGGACAATTC
EST: TTACATTGGGATACTTCAAGAACCAGGGGAAGACGGATGAAGATTACAAG GTTGACGAGAGGGGCATGAGATGGTTCTACACTGGTGACATTGGACAGTTCEST: gi|169113590|gb|FE514501.1|FE514501
genomic: TTACATTGGGATACTTCAAGAACCAGGGGAAGACGGATGAAGATTACAAGgtacaacttt ... ttttgtgaagGTTGACGAGAGGGGCATGAGATGGTTCTACACTGGTGACATTGGACAATTC
EST: TTACATTGGGATTCTTCAAGATCCAGGGGAAGACGGATGATGATTACAAG GTTGACGAGAGGGGCATGAGATGGTTCTACACTGGTGACATTGGACAATTCEST: gi|169054875|gb|FE463479.1|FE463479
genomic: TTACATTGGGATACTTCAAGAACCAGGGGAAGACGGATGAAGATTACAAGgtacaacttt ... ttttgtgaagGTTGACGAGAGGGGCATGAGATGGTTCTACACTGGTGACATTGGACAATTC
EST: TTACATTGGGATACTTCAAGAACCAGGGGAAGACGGATGAAGATTACAAG GTTGACGAGAGGGGCATGAGATGGTTCTACACTGGTGACATTGGACAGTTCEST: gi|169113591|gb|FE514502.1|FE514502
genomic: TTACATTGGGATACTTCAAGAACCAGGGGAAGACGGATGAAGATTACAAGgtacaacttt ... ttttgtgaagGTTGACGAGAGGGGCATGAGATGGTTCTACACTGGTGACATTGGACAATTC
EST: TTACATTGGGATACTTCAAGAACCAGGGGAAGACGGATGAAGATTACCAG GTTGACGAGAGGGGCATGAGATGGTTCTACACTGGTGACATTGGACAATTC
genomic: TTACATTGGGATACTTCAAGAACCAGGGGAAGACGGATGAAGATTACAAGgtacaacttt ... ttttgtgaagGTTGACGAGAGGGGCATGAGATGGTTCTACACTGGTGACATTGGACAATTC
gtacaacttttcagtttccttgaagcgttcatgtttaattcgtttttttgtgaagGTTGACGAGAGGGGCATGAGATGGTTCTACACTGGTGACATTGGACAATTCCATCCCGATGGTTGCTTAGAAATTGTAGACCGGAAGAAGGACATTGTTA
gtttaat putative branch site (score: 18)
ttcgttttttt CT-rich tract
tttaattcgttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacaacttttcagtttccttgaagcgttcatgtttaattcgtttttttgtgaagGTTGACGAGAGGGGCATGAGATGGTTCTACACTGGTGACATTGGACAATTCCATCCCGATGGTTGCTTAGAAATTGTAGACCGGAAGAAGGACATTGTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG