1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaaaagcaaacacatatccttgcgatagtctgcatttgcttaaaacctcttgcgcctgcgcagGAAGATATGGCCAACCAGAGGAAGTGGCTGGTCTCGTCAAGTTTCTCGCTCTCGACCCGGCAGCTGCTTATATTACAGGACAG
species | Selaginella moellendorffii |
transcript | EFJ26070 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AAAACTGGGAGACGAAATTGAGAAGAAAATACTCCAAACCATTCCATTGG GAAGATATGGCCAACCAGAGGAAGTGGCTGGTCTCGTCAAGTTTCTCGCTCEST: gi|169056499|gb|FE464907.1|FE464907
genomic: AAAACTGGGAGACGAAATTGAGAAGAAAATACTCCAGACCATTCCATTGGgtaaaagcaa ... gcctgcgcagGAAGATATGGCCAACCAGAGGAAGTGGCTGGTCTCGTCAAGTTTCTCGCTC
EST: AAAACTGGGAGACGAAATTGAGAAGAAAATACTCCAAACCATTCCATTGG GAAGATATGGCCAACCAGAGGAAGTGGCTGGTCTCGTCAAGTTTCTCGCTCEST: gi|169105718|gb|FE508484.1|FE508484
genomic: AAAACTGGGAGACGAAATTGAGAAGAAAATACTCCAGACCATTCCATTGGgtaaaagcaa ... gcctgcgcagGAAGATATGGCCAACCAGAGGAAGTGGCTGGTCTCGTCAAGTTTCTCGCTC
EST: AAAACTGGGAGACGAAATTGAGAAGAAAATACTCCAGACCATTCCATTGG GAAGATATGGCCAACCAGAGGAAGTGGCTGGTCTCGTCAAGTTTCTCGCTCEST: gi|169056498|gb|FE464906.1|FE464906
genomic: AAAACTGGGAGACGAAATTGAGAAGAAAATACTCCAGACCATTCCATTGGgtaaaagcaa ... gcctgcgcagGAAGATATGGCCAACCAGAGGAAGTGGCTGGTCTCGTCAAGTTTCTCGCTC
EST: AAAACTGGGAGACGAAATTGAGAAGAAAATACTCCAAACCATTCCATTGG GAAGATATGGCCAACCAGAGGAAGTGGCTGGTCTCGTCAAGTTTCTCGCTCEST: gi|70671166|gb|DN839743.1|DN839743
genomic: AAAACTGGGAGACGAAATTGAGAAGAAAATACTCCAGACCATTCCATTGGgtaaaagcaa ... gcctgcgcagGAAGATATGGCCAACCAGAGGAAGTGGCTGGTCTCGTCAAGTTTCTCGCTC
EST: AAAACTGGGAGACGAAATTGAGAAGAAAATACTCCAAACCATTCCATTGG GAAGATATGGCCAACCAGAGGAAGTGGCTGGTCTCGTCAAGTTTCTCGCTC
genomic: AAAACTGGGAGACGAAATTGAGAAGAAAATACTCCAGACCATTCCATTGGgtaaaagcaa ... gcctgcgcagGAAGATATGGCCAACCAGAGGAAGTGGCTGGTCTCGTCAAGTTTCTCGCTC
aacacatatccttgcgatagtctgcatttgcttaaaacctcttgcgcctgcgcagGAAGATATGGCCAACCAGAGGAAGTGGCTGGTCTCGTCAAGTTTCTCGCTCTCGACCCGGCAGCTGCTTATATTACAGGACAG
ttaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaagcaaacacatatccttgcgatagtctgcatttgcttaaaacctcttgcgcctgcgcagGAAGATATGGCCAACCAGAGGAAGTGGCTGGTCTCGTCAAGTTTCTCGCTCTCGACCCGGCAGCTGCTTATATTACAGGACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT