1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gttcgtctttcgacaaaaagtttatgcagtgctgacgtatctttttctctcctacagAGGATTACGAAAGAGAAGACCGCGCTTGCCGAAAGACTGAAGTCCACGGAGGCCGTGTGTGCAAACTACGCCGAAGAGTTCGACCGTCTATCGGCAAAGT
species | Selaginella moellendorffii |
transcript | EFJ25012 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ACGCTGAGTCCCAGATATCGCAATTCAAACGCAAACGCGACGATCTAAAG AGGATTACGAAAGAGAAGACCGCGCTTGCCGAAAGACTGAAGTCCACGGAGEST: gi|169083139|gb|FE496435.1|FE496435
genomic: ACGCTGAGTCCCAGATATCGCAATTCAAACGCAAACGCGACGATCTAAAGgttcgtcttt ... tctcctacagAGGATTACGAAAGAGAAGACCGCGCTTGCCGAAAGACTGAAGTCCACGGAG
EST: ACGCTGAGTCCCAGATATCGCAATTCANACGCAAACGCGACGATCTAAAG AGGAT-ACGAAAGEST: gi|169055867|gb|FE465094.1|FE465094
genomic: ACGCTGAGTCCCAGATATCGCAATTCAAACGCAAACGCGACGATCTAAAGgttcgtcttt ... tctcctacagAGGATTACGAAAG
EST: ACGCTGAGTCCCAGATATCGCAATTCAAACGCAAACGCGACGATCTAAAG AGGATTACGAAAGAGAAGACCGCGCTTGCCGAAAGACTGAAGTCCACGGAGEST: gi|169078498|gb|FE490635.1|FE490635
genomic: ACGCTGAGTCCCAGATATCGCAATTCAAACGCAAACGCGACGATCTAAAGgttcgtcttt ... tctcctacagAGGATTACGAAAGAGAAGACCGCGCTTGCCGAAAGACTGAAGTCCACGGAG
EST: ACGCTGAGTCCCAGATATCGCAATTCAAACGCAAACGCGACGATCTAAAG AGGATTACGAAAGAGAAGACCGCGCTTGCCGAAAGACTGAAGTCCACGGAG
genomic: ACGCTGAGTCCCAGATATCGCAATTCAAACGCAAACGCGACGATCTAAAGgttcgtcttt ... tctcctacagAGGATTACGAAAGAGAAGACCGCGCTTGCCGAAAGACTGAAGTCCACGGAG
tcgtctttcgacaaaaagtttatgcagtgctgacgtatctttttctctcctacagAGGATTACGAAAGAGAAGACCGCGCTTGCCGAAAGACTGAAGTCCACGGAGGCCGTGTGTGCAAACTACGCCGAAGAGTTCGACCGTCTATCGGCAAAGT
tgctgac putative branch site (score: 7)
cgtatctttttctctc CT-rich tract
aaaaagtttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgtctttcgacaaaaagtttatgcagtgctgacgtatctttttctctcctacagAGGATTACGAAAGAGAAGACCGCGCTTGCCGAAAGACTGAAGTCCACGGAGGCCGTGTGTGCAAACTACGCCGAAGAGTTCGACCGTCTATCGGCAAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG