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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtacaatcgttttccgttttctggtgttatgcttggttttttattttgtcatcctttctttttgtgcagGTTATGGTCAATGGTTTGCTCTTTCAGTTGTCTCTGCCCCTTAATTTTCTGGGTACTGTCTATCGTGAAACGCGACAGAGCCTTATAGACATGCATGAAA

Basic information

species Selaginella moellendorffii
transcript EFJ24035
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ24035 (Selaginella moellendorffii), 3'ss of exon 8
lower sequence: AT5G58270.1 (Arabidopsis thaliana), 3'ss of exon 8
-----------------------gtaagtacaatcgttttccgttt-tctg-gtgttatgcttggttttttattttgtcatcctttc--tttttg-----tgcagGTTATGGTCAATGGTTTGCTCTTTCAGTTGTCTCTGCCCCTTAATTTTCTGGGTACTGTCTATCGTGAAACGCGACAGAGCCTTATAGACATGCATGAAA
                        |    |      ||||  |||| ||||  | || |       || || | |  | | | |||   | ||||     ||||||||||||| |||||  | ||||||||| ||||||| || || |||||| |||||| ||| || ||||||||    ||||||||| | |||||| |   ||
gtcagtgcgtcctttgatttttccttgacattggtattttatgtttctctgcattttttatccaaattgttttctaataagcttttgcatatttgggtgatgcagGTTATGGTGAATGGACTTCTCTTTCAGCTGTCTCTTCCTCTAAATTTTTTGGGTAGTGTTTACCGTGAAACAATTCAGAGCCTTGTGGACATGAAATCAA

upper sequence: EFJ24035 (Selaginella moellendorffii), 3'ss of exon 8
lower sequence: PP1S249_41V6.1 (Physcomitrella patens), 3'ss of exon 12
-----------------gtaagtacaatcgttttccgttttctggtgtta---tgcttggttttttatt------ttgtcatcctttctttttgt-gcagGTTATGGTCAATGGTTTGCTCTTTCAGTTGTCTCTGCCCCTTAATTTTCTGGGTACTGTCTATCGTGAAACGCGACAGAGCCTTATAGACATGCATGAAA
                     || |    |   |||  |  ||    |||   |||| | || || |||       ||  ||  || |||  |||  ||||| ||||| ||||||||||| |||||||||||||| || || |||||  |||| || || ||  | || || ||||||||| | |||||||||||    |
tctaatgtcgctgttccacttgttcggctggggtcctgtcactccctttacattgctcgtttattaattgaatggatgcgattattgcttcctgttacagGTGATGGTGAATGGTTTGCTGTTTCAGTTGTCTCTACCTCTAAATTTCTTGGGAACAGTATACAGGGAGACACGACAGAGCTTGATAGACATGCACTCCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169038087|gb|FE445840.1|FE445840
EST:     TCATGTGCATTGACGGGATTTTGAAAGGATCAATAACCATTGGGGATCTT                         GTTATGGTCAATGGTTTGCTCTTTCAGTTGTCTCTGCCC-TTAATTTTCTG
genomic: TCATGTGCATTGACGGGATTTTGAAAGGATCAATAACCATTGGGGATCTTgtaagtacaa ... ttttgtgcagGTTATGGTCAATGGTTTGCTCTTTCAGTTGTCTCTGCCCCTTAATTTTCTG
EST: gi|169046165|gb|FE456350.1|FE456350
EST:     TCATGTGCATTGACGGGATTTTGAAAGGATCAATAACCATTGGGGATCTT                         GTTATGGTCAATGGTTTGCTCTTTCAGTTGTCTCTGCCCCTTAATTTTCTG
genomic: TCATGTGCATTGACGGGATTTTGAAAGGATCAATAACCATTGGGGATCTTgtaagtacaa ... ttttgtgcagGTTATGGTCAATGGTTTGCTCTTTCAGTTGTCTCTGCCCCTTAATTTTCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgttttctggtgttatgcttggttttttattttgtcatcctttctttttgtgcagGTTATGGTCAATGGTTTGCTCTTTCAGTTGTCTCTGCCCCTTAATTTTCTGGGTACTGTCTATCGTGAAACGCGACAGAGCCTTATAGACATGCATGAAA
                      ttttttattttgtcat  CT-rich tract
                      ttttttattttgtcat  TA-rich tract