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gtattgtttcaaaatacgtattggaattgtgaaggagcgggtttgcatgcagCATATACAAGAAAAAGAAAAATCTAGAAGAAGCTGGAGACGTTGCTCAG
species | Selaginella moellendorffii |
transcript | EFJ23048 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CATGTAATTGATGGTGTCAACATTTTTACTTTATGTAAAGACCTTTATAG CATATACAAGAAAAAGAAAAATCTAGAAGAAGCTGGAGACGTTGCTCAGEST: gi|169021634|gb|FE428851.1|FE428851
genomic: CATGTAATTGATGGTGTCAACATTTTTACTTTATGTAAAGACCTTTATAGgtattgtttc ... ttgcatgcagCATATACAAGAAAAAGAAAAATCTAGAAGAAGCTGGAGACGTTGCTCAG
EST: CATGTAATTGATGGTGTCAACATTTTTACTTTATGTAAAGACCTGTATAG CATATACAAGAAAAAGAAAAATCTAGAAGAAGCTGGAGACGTTGCTCAGEST: gi|169103802|gb|FE504204.1|FE504204
genomic: CATGTAATTGATGGTGTCAACATTTTTACTTTATGTAAAGACCTTTATAGgtattgtttc ... ttgcatgcagCATATACAAGAAAAAGAAAAATCTAGAAGAAGCTGGAGACGTTGCTCAG
EST: CATGTAATTGATGGTGTCAACATTTTTACTTTATGTAAAGACCTGTATAG CATATACAAGAAAAAGAAAAATCTAGAAGAAGCTGGAGACGTTGCTCAGEST: gi|169020542|gb|FE429800.1|FE429800
genomic: CATGTAATTGATGGTGTCAACATTTTTACTTTATGTAAAGACCTTTATAGgtattgtttc ... ttgcatgcagCATATACAAGAAAAAGAAAAATCTAGAAGAAGCTGGAGACGTTGCTCAG
EST: CATGTAATTGATGGTGTCAACATTTTTACTTTATGTAAAGACCTTTATAG CATATACAAGAAAAAGAAAAATCTAGAAGAAGCTGGAGACGTTGCTCAGEST: gi|169028084|gb|FE435429.1|FE435429
genomic: CATGTAATTGATGGTGTCAACATTTTTACTTTATGTAAAGACCTTTATAGgtattgtttc ... ttgcatgcagCATATACAAGAAAAAGAAAAATCTAGAAGAAGCTGGAGACGTTGCTCAG
EST: CATGTAATTGATGGTGTCAACATTTTTACTTTATGTAAAGACCTGTATAG CATATACAAGAAAAAGAAAAATCTAGAAGAAGCTGGAGACGTTGCTCAG
genomic: CATGTAATTGATGGTGTCAACATTTTTACTTTATGTAAAGACCTTTATAGgtattgtttc ... ttgcatgcagCATATACAAGAAAAAGAAAAATCTAGAAGAAGCTGGAGACGTTGCTCAG
gtattgtttcaaaatacgtattggaattgtgaaggagcgggtttgcatgcagCATATACAAGAAAAAGAAAAATCTAGAAGAAGCTGGAGACGTTGCTCAG
attgtttcaaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattgtttcaaaatacgtattggaattgtgaaggagcgggtttgcatgcagCATATACAAGAAAAAGAAAAATCTAGAAGAAGCTGGAGACGTTGCTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA