1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gttcgtgtcgattattttggtcgttgattgagtgagatggccttgtttgtgttacagTTCGCAGAAGGCAGCTTAAATGGCCCAATTCAGTATTGA
species | Selaginella moellendorffii |
transcript | EFJ22908 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AAGGGGAGACTTCCAAGTTCGGTAATACTTCCAATCCTATAGTTCGTCAG TTCGCAGAAGGCAGCTTAAATGGCCCAATTCAGTATTGAEST: gi|169033507|gb|FE442059.1|FE442059
genomic: AAGGGGAGACTTCCAAGTTCGGTAATACTTCCAATCCTATAGTTCGTCAGgttcgtgtcg ... tgtgttacagTTCGCAGAAGGCAGCTTAAATGGCCCAATTCAGTATTGA
EST: GGGGAGACTTCCAANNGT-CGGTAC-ACTTCCNATCCTATAGTTCGTCAG TTCGCGGAGGGCAGEST: gi|169068693|gb|FE479751.1|FE479751
genomic: GGGGAGACTTCCAA--GTTCGGTAATACTTCCAATCCTATAGTTCGTCAGgttcgtgtcg ... tgtgttacagTTCGCAGAAGGCAG
EST: AAGGGGAGACTTCCAAGTTCGGTAATACTTCCAATCCTATAGTTCGTCAG TTCGCAGAAGGCAGCTTAAATGGCCCAATTCAGTATTGAEST: gi|169100790|gb|FE503225.1|FE503225
genomic: AAGGGGAGACTTCCAAGTTCGGTAATACTTCCAATCCTATAGTTCGTCAGgttcgtgtcg ... tgtgttacagTTCGCAGAAGGCAGCTTAAATGGCCCAATTCAGTATTGA
EST: AAGGGGAGACTTCCAAGTTCGGTAATACTTCCAATCCTATAGTTCGTCAG TTCGCAGAAGGCAGCTTAAATGGCCCAATTCAGTATTGA
genomic: AAGGGGAGACTTCCAAGTTCGGTAATACTTCCAATCCTATAGTTCGTCAGgttcgtgtcg ... tgtgttacagTTCGCAGAAGGCAGCTTAAATGGCCCAATTCAGTATTGA
tcgtgtcgattattttggtcgttgattgagtgagatggccttgtttgtgttacagTTCGCAGAAGGCAGCTTAAATGGCCCAATTCAGTATTGA
cgttgat putative branch site (score: 5)
ccttgttt putative PPT
attatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgtgtcgattattttggtcgttgattgagtgagatggccttgtttgtgttacagTTCGCAGAAGGCAGCTTAAATGGCCCAATTCAGTATTGA
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