1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgagtatacttcctttggattatatgtcggtttcactgacatggttcctttggttttgtctttccagGGTTAAACCCACGAAGCTCTCTTACGAGCAGCGCAAGGCCAATCTCATCAACCGGATCAAAGCACTCAACGCGGCCGAAGACGATGAGTAGAGGAAAGTA
species | Selaginella moellendorffii |
transcript | EFJ17161 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CCAAGCCCCCGGGAGCCTCCACCAAAGAAGGATCACGGTCCTCACAAGAA GGTTAAACCCACGAAGCTCTCTTACGAGCAGCGCAAGGCCAATCTCATCAAEST: gi|169033526|gb|FE442078.1|FE442078
genomic: CCAAGCCCCCGGGAGCCTCCACCAAAGAAGGATCACGGTCCTCACAAGAAgtgagtatac ... gtctttccagGGTTAAACCCACGAAGCTCTCTTACGAGCAGCGCAAGGCCAATCTCATCAA
EST: CCAAGCCCCCGGGAGCCTCCACCAAAGAAGGATCACGGTCCTCACAAGAA GGTTAAACCCACGAAGCTCTCTTACGAGCAGCGCAAGGCCAATCTCATCAAEST: gi|169110841|gb|FE509324.1|FE509324
genomic: CCAAGCCCCCGGGAGCCTCCACCAAAGAAGGATCACGGTCCTCACAAGAAgtgagtatac ... gtctttccagGGTTAAACCCACGAAGCTCTCTTACGAGCAGCGCAAGGCCAATCTCATCAA
EST: CCAAGCCCCCGGGAGCCTCCACCAAAGAAGGATCACGGTCCTCACAAGAA GGTTAAACCCACGAAGCTCTCTTACGAGCAGCGCAAGGCCAATCTCATCAAEST: gi|169026340|gb|FE433431.1|FE433431
genomic: CCAAGCCCCCGGGAGCCTCCACCAAAGAAGGATCACGGTCCTCACAAGAAgtgagtatac ... gtctttccagGGTTAAACCCACGAAGCTCTCTTACGAGCAGCGCAAGGCCAATCTCATCAA
EST: CCAAGCCCCCGGGAGCCTCCACCAAAGAAGGATCACGGTCCTCACAAGAA GGTTAAACCCACGAAGCTCTCTTACGAGCAGCGCAAGGCCAATCTCATCAAEST: gi|169106955|gb|FE508838.1|FE508838
genomic: CCAAGCCCCCGGGAGCCTCCACCAAAGAAGGATCACGGTCCTCACAAGAAgtgagtatac ... gtctttccagGGTTAAACCCACGAAGCTCTCTTACGAGCAGCGCAAGGCCAATCTCATCAA
EST: CCAAGCCCCCGGGAGCCTCCACCAAAGAAGGATCACGGTCCTCACAAGAA GGTTAAACCCACGAAGCTCTCTTACGAGCAGCGCAAGGCCAATCTCATCAAEST: gi|169051354|gb|FE459212.1|FE459212
genomic: CCAAGCCCCCGGGAGCCTCCACCAAAGAAGGATCACGGTCCTCACAAGAAgtgagtatac ... gtctttccagGGTTAAACCCACGAAGCTCTCTTACGAGCAGCGCAAGGCCAATCTCATCAA
EST: CCAAGCCCCCGGGAGCCTCCACCAAAGAAGGATCACGGTCCTCACAAGAA GGTTAAACCCACGAAGCTCTCTTACGAGCAGCGCAAGGCCAATCTCATCAAEST: gi|70670052|gb|DN838629.1|DN838629
genomic: CCAAGCCCCCGGGAGCCTCCACCAAAGAAGGATCACGGTCCTCACAAGAAgtgagtatac ... gtctttccagGGTTAAACCCACGAAGCTCTCTTACGAGCAGCGCAAGGCCAATCTCATCAA
EST: CCAAGCCCCCGGGAGCCTCCACCAAAGAAAGATCACGGTCCTCACAAGAA GGTTAAATCTACGAAGCTCTCTTACGAGCAGCGCAGGGTCAATCTCATCAA
genomic: CCAAGCCCCCGGGAGCCTCCACCAAAGAAGGATCACGGTCCTCACAAGAAgtgagtatac ... gtctttccagGGTTAAACCCACGAAGCTCTCTTACGAGCAGCGCAAGGCCAATCTCATCAA
ctttggattatatgtcggtttcactgacatggttcctttggttttgtctttccagGGTTAAACCCACGAAGCTCTCTTACGAGCAGCGCAAGGCCAATCTCATCAACCGGATCAAAGCACTCAACGCGGCCGAAGACGATGAGTAGAGGAAAGTA
cactgac putative branch site (score: 110)
ttcctttggttttgtc putative PPT
attatatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtatacttcctttggattatatgtcggtttcactgacatggttcctttggttttgtctttccagGGTTAAACCCACGAAGCTCTCTTACGAGCAGCGCAAGGCCAATCTCATCAACCGGATCAAAGCACTCAACGCGGCCGAAGACGATGAGTAGAGGAAAGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA