1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaagcttgtacatggagttttgtataagttaaatgcgatgttgtgcttgcagGTCGAGGGAAGCAATTCCAGAATGCGCTCCAAAGCTTGGAAGAGCTGAAAGAAGCGGGGGTTTCTCCTAATCAATTAACTTACAGTATTTTGCTGGAGGC
species | Selaginella moellendorffii |
transcript | EFJ17144 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GNGAATTCGACCCAGCGTTTCTACTCTTAACGCTCTTATGACAGCCTTGT GTCGAGGGAAGCAATTCCAGAATGCGCTCCANAGCTTEST: gi|169081920|gb|FE490536.1|FE490536
genomic: GGGAATTCGACCCAGCGTTTCTACTCTTAACGCTCTTATGACAGCCTTGTgtaagcttgt ... gtgcttgcagGTCGAGGGAAGCAATTCCAGAATGCGCTCCAAAGCTT
EST: GGGAATTCGACCCAGCGTTTCTACTCTTAACGCTCTTATGACAGCCTTGT GTCGAGGGAAGCAATTCCAGAATGCGCTCCAAAGCTTGGAAGAGCTGANAGEST: gi|169040572|gb|FE449703.1|FE449703
genomic: GGGAATTCGACCCAGCGTTTCTACTCTTAACGCTCTTATGACAGCCTTGTgtaagcttgt ... gtgcttgcagGTCGAGGGAAGCAATTCCAGAATGCGCTCCAAAGCTTGGAAGAGCTGAAAG
EST: GGGAATTCGACCCAGCGTTTCTACTCTTAACGCTCTTATGACAGCCTTGT GTCGAGGGAAGCAATTCCAGAATGCGCTCCAAAGCTTGGAAGAGCTGAAAG
genomic: GGGAATTCGACCCAGCGTTTCTACTCTTAACGCTCTTATGACAGCCTTGTgtaagcttgt ... gtgcttgcagGTCGAGGGAAGCAATTCCAGAATGCGCTCCAAAGCTTGGAAGAGCTGAAAG
gtaagcttgtacatggagttttgtataagttaaatgcgatgttgtgcttgcagGTCGAGGGAAGCAATTCCAGAATGCGCTCCAAAGCTTGGAAGAGCTGAAAGAAGCGGGGGTTTCTCCTAATCAATTAACTTACAGTATTTTGCTGGAGGC
ttttgtataagttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcttgtacatggagttttgtataagttaaatgcgatgttgtgcttgcagGTCGAGGGAAGCAATTCCAGAATGCGCTCCAAAGCTTGGAAGAGCTGAAAGAAGCGGGGGTTTCTCCTAATCAATTAACTTACAGTATTTTGCTGGAGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG