1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...cgacatgctcaggcaggagcactgctcgtgtggcagatggtaaattgaagttggcgcaagtgacccactgatcggaacttctggttgggcttgtgagcagCGCGAATGCTTTGAGGTGTATGCTCTTGTTCCAGGACTATTGCGAGAGGAG
species | Selaginella moellendorffii |
transcript | EFJ16229 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTGACGAAGGTCCACAAGCCGACTGGGTGAAGATCAATGTCCATCAAACG CGCGAATGCTTTGAGGTGTATGCTCTTGTTCCAGGACTATTGCGAGAGGAGEST: gi|169078808|gb|FE489632.1|FE489632
genomic: TTGACGAAGGTCCACAAGCCGACTGGGTGAAGATCAATGTCCATCAAACGgtgagttctt ... ttgtgagcagCGCGAATGCTTTGAGGTGTATGCTCTTGTTCCAGGACTATTGCGAGAGGAG
EST: TTGACGAAGGTCCACAAGCCGACTGGGTGAAGATCAATGTCCATCANACG CGCGAATGCTTTGAGGTGTATGCTCTTGTTCCAGGACTATTGCGAGAGGAGEST: gi|169095909|gb|FE499952.1|FE499952
genomic: TTGACGAAGGTCCACAAGCCGACTGGGTGAAGATCAATGTCCATCAAACGgtgagttctt ... ttgtgagcagCGCGAATGCTTTGAGGTGTATGCTCTTGTTCCAGGACTATTGCGAGAGGAG
EST: TTGACGAAGGTCCACAAGCCGACTGGGTGAAGATCAATGTCCATCAAACG CGCGAATGCTTTGAGGTGTATGCTCTTGTTCCAGGACTATTGCGAGAGGAG
genomic: TTGACGAAGGTCCACAAGCCGACTGGGTGAAGATCAATGTCCATCAAACGgtgagttctt ... ttgtgagcagCGCGAATGCTTTGAGGTGTATGCTCTTGTTCCAGGACTATTGCGAGAGGAG
tgaagttggcgcaagtgacccactgatcggaacttctggttgggcttgtgagcagCGCGAATGCTTTGAGGTGTATGCTCTTGTTCCAGGACTATTGCGAGAGGAG
cactgat putative branch site (score: 34)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgacatgctcaggcaggagcactgctcgtgtggcagatggtaaattgaagttggcgcaagtgacccactgatcggaacttctggttgggcttgtgagcagCGCGAATGCTTTGAGGTGTATGCTCTTGTTCCAGGACTATTGCGAGAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG