1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaagtggaagttttgctagagctagactcatgaaatgcttgcagGTGTTTAGAAGACCGAGGAGCCGGGGGTTTTTTGGAGAGATGAGAACGGAGTCGATGAAGCTCAGAAGAAACTGTGAGGTGACTGCCATTCTGGTGCTGT
species | Selaginella moellendorffii |
transcript | EFJ15933 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TCACCGAGACTCGCGGATTGACTCTATCCGAAGAGCAAACTGTTACCTCT GTGTTTAGAAGACCGAGGAGCCGGGGGTTTTTTGGAGAGATGAGAACGGAGEST: gi|169060188|gb|FE468174.1|FE468174
genomic: TCACCGAGACTCGCGGATTGACTCTATCCGAAGAGCAAACTGTTACCTCTgtaagtggaa ... atgcttgcagGTGTTTAGAAGACCGAGGAGCCGGGGGTTTTTTGGAGAGATGAGAACGGAG
EST: TCACCGAGACTCGCGGATTGACTCTATCCGAAGAGCAAACTGTTACCTCT GTGTTTAGAAGACCGAGGAGCCGGGGGTTTTTTGGAGAGATGAGAACGGAGEST: gi|169027721|gb|FE434858.1|FE434858
genomic: TCACCGAGACTCGCGGATTGACTCTATCCGAAGAGCAAACTGTTACCTCTgtaagtggaa ... atgcttgcagGTGTTTAGAAGACCGAGGAGCCGGGGGTTTTTTGGAGAGATGAGAACGGAG
EST: TCACCGAGACTCGCGGATTGACTCTATCCGAAGAGCAAACTGTTACCTCT GTGTTTAGAAGACCGAGGAGCCGGGGGTTTTTTGGAGAGATGAGAACGGAGEST: gi|169088783|gb|FE492813.1|FE492813
genomic: TCACCGAGACTCGCGGATTGACTCTATCCGAAGAGCAAACTGTTACCTCTgtaagtggaa ... atgcttgcagGTGTTTAGAAGACCGAGGAGCCGGGGGTTTTTTGGAGAGATGAGAACGGAG
EST: TCACCGAGACTCGCGGATTGACTCTATCCGAAGAGCAAACTGTTACCTCT GTGTTTAGAAGACCGAGGAGCCGGGGGTTTTTTGGAGAGATGAGAACGGAGEST: gi|169094263|gb|FE495541.1|FE495541
genomic: TCACCGAGACTCGCGGATTGACTCTATCCGAAGAGCAAACTGTTACCTCTgtaagtggaa ... atgcttgcagGTGTTTAGAAGACCGAGGAGCCGGGGGTTTTTTGGAGAGATGAGAACGGAG
EST: GAGCAAACTGTTACCTCT GTGTTTAGAAGACCGAGGAGCCGGGGGTTTTTTGGAGAGATGAGAACGGAG
genomic: GAGCAAACTGTTACCTCTgtaagtggaa ... atgcttgcagGTGTTTAGAAGACCGAGGAGCCGGGGGTTTTTTGGAGAGATGAGAACGGAG
gtaagtggaagttttgctagagctagactcatgaaatgcttgcagGTGTTTAGAAGACCGAGGAGCCGGGGGTTTTTTGGAGAGATGAGAACGGAGTCGATGAAGCTCAGAAGAAACTGTGAGGTGACTGCCATTCTGGTGCTGT
aagtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtggaagttttgctagagctagactcatgaaatgcttgcagGTGTTTAGAAGACCGAGGAGCCGGGGGTTTTTTGGAGAGATGAGAACGGAGTCGATGAAGCTCAGAAGAAACTGTGAGGTGACTGCCATTCTGGTGCTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA