1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagtggtgctctcgattttttttttcttcctcgctttcaccttgttttaacgcctcgctcgtaaatcctttccagGAAATCTTGCTGAGAGTTTGCTGTGCGATGCTACTGTCCGTGAGGAATCGACTCCTCGCGGGCGATTTCACTTCCAACTTGAAGCTCTTGCAACACTTTC
species | Selaginella moellendorffii |
transcript | EFJ15182 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ATACTCTCCGGCTTTGGGATTCTCTTCTCAGCAATCCCGACGGGCCACTG GAAATCTTGCTAAGAGTTTGCTGTGCGATGCTACTGTCCGTGAGGAATCGAEST: gi|169112872|gb|FE514624.1|FE514624
genomic: ATACTCTCCGGCTTTGGGATTCTCTTCTCAGCAATCCCGACGGGCCACTGgtaagtggtg ... tcctttccagGAAATCTTGCTGAGAGTTTGCTGTGCGATGCTACTGTCCGTGAGGAATCGA
EST: ATACTCTCCGGCTTTGGGATTCTCTTCTCAGCAATCCCGACGGGCCACTG GAAATCTTGCTAAGAGTTTGCTGTGCGATGCTACTGTCCGTGAGGAATCGAEST: gi|169045041|gb|FE450911.1|FE450911
genomic: ATACTCTCCGGCTTTGGGATTCTCTTCTCAGCAATCCCGACGGGCCACTGgtaagtggtg ... tcctttccagGAAATCTTGCTGAGAGTTTGCTGTGCGATGCTACTGTCCGTGAGGAATCGA
EST: ATACTCTCCGGCTTTGGGATTCTCTTTTCAGCAATCCCGACGGGCCACTG GAAATCTTGCTAAGAGTTTGCTGTGCGATGCTACTGTCCGTGAGGAATCGAEST: gi|169021029|gb|FE430638.1|FE430638
genomic: ATACTCTCCGGCTTTGGGATTCTCTTCTCAGCAATCCCGACGGGCCACTGgtaagtggtg ... tcctttccagGAAATCTTGCTGAGAGTTTGCTGTGCGATGCTACTGTCCGTGAGGAATCGA
EST: ATACTCTCCGGCTTTGGGATTCTCTTCTCAGCAATCCCGACGGGCCACTG GAAATCTTGCTAAGAGTTTGCTGTGCGATGCTACTGTCCGTGAGGAATCGAEST: gi|169021028|gb|FE430637.1|FE430637
genomic: ATACTCTCCGGCTTTGGGATTCTCTTCTCAGCAATCCCGACGGGCCACTGgtaagtggtg ... tcctttccagGAAATCTTGCTGAGAGTTTGCTGTGCGATGCTACTGTCCGTGAGGAATCGA
EST: ATACTCTCCGGCTTTGGGATTCTCTTCTCAGCAATCCCGACGGGCCACTG GAAATCTTGCTAAGAGTTTGCTGTGCGATGCTACTGTCCGTGAGGAATCGA
genomic: ATACTCTCCGGCTTTGGGATTCTCTTCTCAGCAATCCCGACGGGCCACTGgtaagtggtg ... tcctttccagGAAATCTTGCTGAGAGTTTGCTGTGCGATGCTACTGTCCGTGAGGAATCGA
tttttcttcctcgctttcaccttgttttaacgcctcgctcgtaaatcctttccagGAAATCTTGCTGAGAGTTTGCTGTGCGATGCTACTGTCCGTGAGGAATCGACTCCTCGCGGGCGATTTCACTTCCAACTTGAAGCTCTTGCAACACTTTC
ttttaac putative branch site (score: 3)
tcctttcc putative PPT
ttgttttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtggtgctctcgattttttttttcttcctcgctttcaccttgttttaacgcctcgctcgtaaatcctttccagGAAATCTTGCTGAGAGTTTGCTGTGCGATGCTACTGTCCGTGAGGAATCGACTCCTCGCGGGCGATTTCACTTCCAACTTGAAGCTCTTGCAACACTTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC