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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtttctgctttctctatttaacagccggtttaatctgagttacagCTACTTCACAAATACTTTGATTCTTCCTGAAGTCAATGGCCCCACTGAGGGTCTCATGTTGATCTATCTGATTCATTTTTTCACATCTCTTGTTG

Basic information

species Selaginella moellendorffii
transcript EFJ14843
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169062984|gb|FE472942.1|FE472942
EST:     TGGTTCTGGGCCATAGCAACTGTTCCTTTTTACATGGCTACCTGGGAGCA                         CTACTTCACAAATACTTTGATTCTTCCTGAAGTCAATGGCCCCACTGAGGG
genomic: TGGTTCTGGGCCATAGCAACTGTTCCTTTTTACATGGCTACCTGGGAGCAgtacgtttct ... tgagttacagCTACTTCACAAATACTTTGATTCTTCCTGAAGTCAATGGCCCCACTGAGGG
EST: gi|169054410|gb|FE462103.1|FE462103
EST:     TGGTTCTGGGCCATAGCAACTGTTCCTTTTTACATGGCTACCTGGGAGCA                         CTACTTCACAAATACTTTGATTCTTCCTGAAGTCAATGGCCCCACTGAGGG
genomic: TGGTTCTGGGCCATAGCAACTGTTCCTTTTTACATGGCTACCTGGGAGCAgtacgtttct ... tgagttacagCTACTTCACAAATACTTTGATTCTTCCTGAAGTCAATGGCCCCACTGAGGG
EST: gi|169020526|gb|FE429797.1|FE429797
EST:     TGGTTCTGGGCCATAGCAACTGTTCCTTTTTACATGGCTACCTGGGAGCA                         CTACTTCACAAATACTTTGATTCTTCCTGAAGTCAATGGCCCCACTGAGGG
genomic: TGGTTCTGGGCCATAGCAACTGTTCCTTTTTACATGGCTACCTGGGAGCAgtacgtttct ... tgagttacagCTACTTCACAAATACTTTGATTCTTCCTGAAGTCAATGGCCCCACTGAGGG
EST: gi|169108716|gb|FE510515.1|FE510515
EST:     TGGTTCTGGGCCATAGCAACTGTTCCTTTTTACATGGCTACCTGGGAGCA                         CTACTTCACAAATACTTTGATTCTTCCTGAAGTCAATGGCCCCACTGAGGG
genomic: TGGTTCTGGGCCATAGCAACTGTTCCTTTTTACATGGCTACCTGGGAGCAgtacgtttct ... tgagttacagCTACTTCACAAATACTTTGATTCTTCCTGAAGTCAATGGCCCCACTGAGGG
EST: gi|169063659|gb|FE471765.1|FE471765
EST:     TGGTTCTGGGCCATAGCAACTGTTCCTTTTTACATGGCTACCTGGGAGCA                         CTACTTCACAAATACTTTGATTCTTCCTGAAGTCAATGGCCCCACTGAGGG
genomic: TGGTTCTGGGCCATAGCAACTGTTCCTTTTTACATGGCTACCTGGGAGCAgtacgtttct ... tgagttacagCTACTTCACAAATACTTTGATTCTTCCTGAAGTCAATGGCCCCACTGAGGG
EST: gi|169105270|gb|FE506372.1|FE506372
EST:     TGGTTCTGGGCCATAGCAACTGTTCCTTTTTACATGGCTACCTGGGAGCA                         CTACTTCACAAATACTTTGATTCTTCCTGAAGTCAATGGCCCCACTGAGGG
genomic: TGGTTCTGGGCCATAGCAACTGTTCCTTTTTACATGGCTACCTGGGAGCAgtacgtttct ... tgagttacagCTACTTCACAAATACTTTGATTCTTCCTGAAGTCAATGGCCCCACTGAGGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 34 (upstream exon), 32 (downstream exon)
Score: 7

TCGAAACGATGGCTTTCGGTGCTTCTGTTATGAGTGGATCGCATACTCTCTGGTTCTGGGCCATAGCAACTGTTCCTTTTTACATGGCTACCTGGGAGCAgtacgtttct ... tgagttacagCTACTTCACAAATACTTTGATTCTTCCTGAAGTCAATGGCCCCACTGAGGGTCTCATGTTGATCTATCTGATTCATTTTTTCACATCTCTTGTTG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtacgtttctgctttctctatttaacagccggtttaatctgagttacagCTACTTCACAAATACTTTGATTCTTCCTGAAGTCAATGGCCCCACTGAGGGTCTCATGTTGATCTATCTGATTCATTTTTTCACATCTCTTGTTG
                                 tctatttaa  TA-rich tract