1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagtcgaccgtagcttttctttcggaaacctctcattccatccattttcgcagGTGTTTTGCTATCACAAGTCACTCCCGATGCCACTGGCGACTCACAAGTTTGGCTCCTCGGACCCGGTCTCCGGCCAGGAAAACGAAGACGATGGAGGTC
species | Selaginella moellendorffii |
transcript | EFJ14473 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GATTGTCTGTATCCGATGGCTACATCGCGTGTGGCTCAGAGACAAACGCC GTGTTTTGCTATCACAAGTCACTCCCGATGCCACTGGCGACTCACAAGTTTEST: gi|169064397|gb|FE472064.1|FE472064
genomic: GATTGTCTGTATCCGATGGCTACATCGCGTGTGGCTCAGAGACAAACGCCgtaagtcgac ... attttcgcagGTGTTTTGCTATCACAAGTCACTCCCGATGCCACTGGCGACTCACAAGTTT
EST: GACTGTCTGTATCCGATGGCTACATCGCGTGTGGCTCAGAGACAAATGCT GTGTTTTGCTATCACAAGTCACTCCCGATGCCACTGGCGACTCACAAGTTTEST: gi|169070974|gb|FE477365.1|FE477365
genomic: GATTGTCTGTATCCGATGGCTACATCGCGTGTGGCTCAGAGACAAACGCCgtaagtcgac ... attttcgcagGTGTTTTGCTATCACAAGTCACTCCCGATGCCACTGGCGACTCACAAGTTT
EST: GATTGTCTGTATCCGATGGCTACATCGCGTGTGGCTCAGAGACAAACGCC GTGTTTTGCTATCACAAGTCACTCCCGATGCCACTGGCGACTCACAAGTTTEST: gi|169102857|gb|FE508641.1|FE508641
genomic: GATTGTCTGTATCCGATGGCTACATCGCGTGTGGCTCAGAGACAAACGCCgtaagtcgac ... attttcgcagGTGTTTTGCTATCACAAGTCACTCCCGATGCCACTGGCGACTCACAAGTTT
EST: GATTGTCTGTATCCGATGGCTACATCGCGTGTGGCTCAGAGACAAACGCC GTGTTTTGCTATCACAAGTCACTCCCGATGCCACTGGCGACTCACAAGTTTEST: gi|169059482|gb|FE468508.1|FE468508
genomic: GATTGTCTGTATCCGATGGCTACATCGCGTGTGGCTCAGAGACAAACGCCgtaagtcgac ... attttcgcagGTGTTTTGCTATCACAAGTCACTCCCGATGCCACTGGCGACTCACAAGTTT
EST: GATTGTCTGTATCCGATGGCTACATCGCGTGTGGCTCAGAGACAAACGCC GTGTTTTGCTATCACAAGTCACTCCCGATGCCACTGGCGACTCACAAGTTT
genomic: GATTGTCTGTATCCGATGGCTACATCGCGTGTGGCTCAGAGACAAACGCCgtaagtcgac ... attttcgcagGTGTTTTGCTATCACAAGTCACTCCCGATGCCACTGGCGACTCACAAGTTT
gtaagtcgaccgtagcttttctttcggaaacctctcattccatccattttcgcagGTGTTTTGCTATCACAAGTCACTCCCGATGCCACTGGCGACTCACAAGTTTGGCTCCTCGGACCCGGTCTCCGGCCAGGAAAACGAAGACGATGGAGGTC
cctctcattccatcca CT-rich tract
ttttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtcgaccgtagcttttctttcggaaacctctcattccatccattttcgcagGTGTTTTGCTATCACAAGTCACTCCCGATGCCACTGGCGACTCACAAGTTTGGCTCCTCGGACCCGGTCTCCGGCCAGGAAAACGAAGACGATGGAGGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG