1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
gtaggataagaatcttttcccgtttttgtctctatttttatttaactgttcttatgttttgtgctagACTGTTTATCATAATGCATATAATCAGGACCCATACGCCCAGGAGTTTGGGATACGTATCAGTGACAGACTGGCTCTCGTGGAAGCTAGAATACTGCCTG
species | Selaginella moellendorffii |
transcript | EFJ14095 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TAAAAGTAACATGCCAACGGCCCAGGGAAAGAGAACTCGATATTTTGCAA ACTGTTTATCATAATGCATATAATCAGGACCCATACGCCCAGGAGTTTGGGEST: gi|169027234|gb|FE435092.1|FE435092
genomic: TAAAAGTAACATGCCAACGGCCCAGGGAAAGAGAACTCGATATTTTGCAAgtaggataag ... tttgtgctagACTGTTTATCATAATGCATATAATCAGGACCCATACGCCCAGGAGTTTGGG
EST: TAAAAGTAACATGCCAACGGCCCAGGGAAAGAGAACTCGATATTTTGCAA ACTGTTTATCATAATGCATATAATCAAGACCCATACGCCCAGGAGTTTGGGEST: gi|169052413|gb|FE462247.1|FE462247
genomic: TAAAAGTAACATGCCAACGGCCCAGGGAAAGAGAACTCGATATTTTGCAAgtaggataag ... tttgtgctagACTGTTTATCATAATGCATATAATCAGGACCCATACGCCCAGGAGTTTGGG
EST: TAAAAGTAACATGCCAACGGCCCAGGGAAAGAGAACTCGATATTTTGCAA ACTGTTTATCATAATGCATATAATCAAGACCCATACGCCCAGGAGTTTGGGEST: gi|169078634|gb|FE487066.1|FE487066
genomic: TAAAAGTAACATGCCAACGGCCCAGGGAAAGAGAACTCGATATTTTGCAAgtaggataag ... tttgtgctagACTGTTTATCATAATGCATATAATCAGGACCCATACGCCCAGGAGTTTGGG
EST: TAAAAGTAACATGCCAACGGCCCAGGGAAAGAGAACTCGATATTTTGCAA ACTGTTTATCATAATGCATATAATCAAGACCCATACGCCCAGGAGTTTGGGEST: gi|169025754|gb|FE433664.1|FE433664
genomic: TAAAAGTAACATGCCAACGGCCCAGGGAAAGAGAACTCGATATTTTGCAAgtaggataag ... tttgtgctagACTGTTTATCATAATGCATATAATCAGGACCCATACGCCCAGGAGTTTGGG
EST: TAAAAGTAACATGCCAACGGCCCAGGGAAAGAGAACTCGATATTTTGCAA ACTGTTTATCATAATGCATATAATCAGGACCCATACGCCCAGGAGTTTGGGEST: gi|169094790|gb|FE492941.1|FE492941
genomic: TAAAAGTAACATGCCAACGGCCCAGGGAAAGAGAACTCGATATTTTGCAAgtaggataag ... tttgtgctagACTGTTTATCATAATGCATATAATCAGGACCCATACGCCCAGGAGTTTGGG
EST: TAAAAGTAACATGCCAACGGCCCAGGGAAAGAGAACTCGATATTTTGCAA ACTGTTTATCATAATGCATATAATCAAGACCCATACGCCCAGGAGTTTGGGEST: gi|169077160|gb|FE484539.1|FE484539
genomic: TAAAAGTAACATGCCAACGGCCCAGGGAAAGAGAACTCGATATTTTGCAAgtaggataag ... tttgtgctagACTGTTTATCATAATGCATATAATCAGGACCCATACGCCCAGGAGTTTGGG
EST: TAAAAGTAACATGCCAACGGCCCAGGGAAAGAGAACTCGATATTTTGCAA ACTGTTTATCATAATGCATATAATCAAGACCCATACGCCCAGGAGTTTGGG
genomic: TAAAAGTAACATGCCAACGGCCCAGGGAAAGAGAACTCGATATTTTGCAAgtaggataag ... tttgtgctagACTGTTTATCATAATGCATATAATCAGGACCCATACGCCCAGGAGTTTGGG
tcttttcccgtttttgtctctatttttatttaactgttcttatgttttgtgctagACTGTTTATCATAATGCATATAATCAGGACCCATACGCCCAGGAGTTTGGGATACGTATCAGTGACAGACTGGCTCTCGTGGAAGCTAGAATACTGCCTG
atttaac putative branch site (score: 25)
tatttttatttaactg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggataagaatcttttcccgtttttgtctctatttttatttaactgttcttatgttttgtgctagACTGTTTATCATAATGCATATAATCAGGACCCATACGCCCAGGAGTTTGGGATACGTATCAGTGACAGACTGGCTCTCGTGGAAGCTAGAATACTGCCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG