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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtaaagcttccgttaaagtcttgatgtagaaacttgctatgtttgcagAACAAGTATTCCTGGATACTCAGCCATTGATACGGTCAGTTCTTGATGGTTACAACGTGTGTATTTTTGCGTATGGTCAAACAGGCTCGGGAAAAACGTA

Basic information

species Selaginella moellendorffii
transcript EFJ12333
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ12333 (Selaginella moellendorffii), 3'ss of exon 8
lower sequence: LOC_Os06g36080.1 (Oryza sativa), 3'ss of exon 11
----------------------------------------------------------------------------------gtagtaaagcttccgttaaagtc---ttgatgtagaaacttgctatgtttgcagAACAAGTATTCCTGGATACTCAGCCATTGATACGGTCAGTTCTTGATGGTTACAACGTGTGTATTTTTGCGTATGGTCAAACAGGCTCGGGAAAAACGTA
                                                                                   | | |  |||  | |  |  |    || || |  | | |   | | |    |||  | ||||||  ||| | ||| ||| | ||  | |||||||||||||| || || || ||||||||||||||||||||||| || || || ||||| ||
gtaagaataaaagcgacacttaagtgaaatttgttgtgctttagtgttgattatactaattgtccagagaaagtaccgaaattttgcagtgctaacatacagtttatgttcatttgtatattcattttctggctagATGAGGTATTCAAGGAAATTCAACCACTAATTAGATCAGTTCTTGATGGCTATAATGTTTGTATTTTTGCGTATGGTCAAACTGGATCAGGGAAAACATA

upper sequence: EFJ12333 (Selaginella moellendorffii), 3'ss of exon 8
lower sequence: LOC_Os05g44560.1 (Oryza sativa), 3'ss of exon 13
-----------------------gtagta-aagctt--ccgttaaagtcttgatgtagaaacttgctat---gtttgcagAACAAGTATTCCTGGATACTCAGCCATTGATACGGTCAGTTCTTGATGGTTACAACGTGTGTATTTTTGCGTATGGTCAAACAGGCTCGGGAAAAACGTA
                        | ||| ||||||  | ||       |  ||    | ||||    |    ||| |||   | || |||  ||| | ||| ||  |||| || |||||||||||||| | ||| || ||||||||||| ||||||||||| || || |||||||| ||
gtatatttttttacaatggaaatctggtataagcttatctgtgtgcaaataaattctaatacttatctttcaatttacagCTGAGGTTTTCTCGGACATTCAACCGCTGATTCGATCAGTTCTTGATGGATTCAATGTTTGTATTTTTGCTTATGGTCAAACTGGTTCAGGAAAAACTTA

upper sequence: EFJ12333 (Selaginella moellendorffii), 3'ss of exon 8
lower sequence: GRMZM2G062034_T01 (Zea mays), 3'ss of exon 4
----------------------------------------------------------------gtagtaaagc-ttccgttaaagtcttgatgtagaaacttgctatgtt------tgcagAACAAGTATTCCTGGATACTCAGCCATTGATACGGTCAGTTCTTGATGGTTACAACGTGTGTATTTTTGCGTATGGTCAAACAGGCTCGGGAAAAACGTA
                                                                 ||  | |||  |  |||| |   ||  |||   | ||| || | ||      |  |||    || |||   |||| || |||| | ||  | |||||||||||||| ||||| || || |||||||| ||||||||||| || || ||||||||  |
gtgctaatgacattgaaataaaaatatatcttttgtttaatctatttaattgctataagtactcataaaatagcactgagttatacattttttgtcatatctttctttcttgtttgttatagATATGGTTTTCAACGATATTCGGCCACTAATTAGATCAGTTCTTGATGGCTACAATGTTTGCATTTTTGCATATGGTCAAACTGGATCAGGAAAAACACA

upper sequence: EFJ12333 (Selaginella moellendorffii), 3'ss of exon 8
lower sequence: GLYMA05G37800.1 (Glycine max), 3'ss of exon 13
-----------------------------------------------------------gtagtaaagcttccgttaaagtc---ttgatgtagaaacttgctatgtttgcagAACAAGTATTCCTGGATACTCAGCCATTGATACGGTCAGTTCTTGATGGTTACAACGTGTGTATTTTTGCGTATGGTCAAACAGGCTCGGGAAAAACGTA
                                                            |  | ||  |     ||| ||     | ||  |  ||  |  | | |||| ||   || |||||  ||| ||||| |||||||| || || ||||||||||| ||||| || ||||| ||||| ||||||||||| ||||||||||| || ||
gtactgcatttttttttcttttctatttcatgattattattattagtacttgttttctattgttgaaattgatagtaatgttcaacttatacatcaatatttt-tctttgtagGGGAAATATTCAAGGACACTCAACCATTGATTCGATCTGTTCTTGATGGGTACAATGTTTGTATATTTGCTTATGGTCAAACCGGCTCGGGAAAGACATA

upper sequence: EFJ12333 (Selaginella moellendorffii), 3'ss of exon 8
lower sequence: GLYMA08G01800.1 (Glycine max), 3'ss of exon 13
-----------------------------------------------------------------------------gtagtaaagcttccgttaaagtct---tgatgtagaaacttgctatgtttgcagAACAAGTATTCCTGGATACTCAGCCATTGATACGGTCAGTTCTTGATGGTTACAACGTGTGTATTTTTGCGTATGGTCAAACAGGCTCGGGAAAAACGTA
                                                                              |  | ||  |     ||| || |   | || |   ||  |  | | |||| |||  || |||||  ||| ||||| |||||||| || || ||||||||||| ||||| || ||||| ||||| ||||||||||| ||||||||||| || ||
gtactgcgtttttttttcttttctctttcatgattattattattattattattattattattggtacttgttttctattgttgaaattgatagtaatgtttaacttatatgtcaatatttt-tctttgtagAGGAAATATTCAAGGACACTCAACCATTGATTCGATCTGTTCTTGATGGGTACAATGTTTGTATATTTGCTTATGGTCAAACTGGCTCGGGAAAGACATA

upper sequence: EFJ12333 (Selaginella moellendorffii), 3'ss of exon 8
lower sequence: Vv02s0025g03480.t01 (Vitis vinifera), 3'ss of exon 14
----------------------------------------------------------------------------------------gtagtaaagcttccgttaaagtcttgatgtagaaacttgctatgtttgcagAACAAGTATTCCTGGATACTCAGCCATTGATACGGTCAGTTCTTGATGGTTACAACGTGTGTATTTTTGCGTATGGTCAAACAGGCTCGGGAAAAACGTA
                                                                                        | |  ||   ||   |||    ||| || |  | |     | ||||  ||||  | |||||  | || ||||| ||||| || || || || |||||||| ||||| || ||||| ||||| ||||||||||| ||||| |||||||| ||
gttatcttcttataatattttatatttggccttgtttctttatttgtatatcctcagatttctattccacttagcatgcttttgttaggaaagaacttttaacttactacctttatttgtatatacattgtgttatcagAGGAGGTATTTTTAGACACTCAACCATTAATTCGATCTGTACTTGATGGATACAATGTCTGTATATTTGCCTATGGTCAAACTGGCTCTGGAAAAACCTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtagtaaagcttccgttaaagtcttgatgtagaaacttgctatgtttgcagAACAAGTATTCCTGGATACTCAGCCATTGATACGGTCAGTTCTTGATGGTTACAACGTGTGTATTTTTGCGTATGGTCAAACAGGCTCGGGAAAAACGTA
                         tcttgat  putative branch site (score: 4)
         tagtaaa  TA-rich tract