1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtacgcgtcgcatgcgtttgcgtatcttttacatcgcgcgtgctgtttttgcagATAGAGTTTGACGAGGAAGGCAAGGTTAGAGGCGTCACCTCCGAAGGTGAAACTGCCAGGACCAAGAAAGTTGTCTGCGATCCTAGCTATGCACGAAACA
species | Selaginella moellendorffii |
transcript | EFJ11673 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGAGTGCNGTATACGGCGGGACGTACATGCTTCAGAAGCCAGACTGCACG ATAGAGTTTGACGAGGAAGGCAAGGTTAGAGGCGTCACCTCCGAAGGTGAAEST: gi|169070710|gb|FE477309.1|FE477309
genomic: TGAGTGCCGTATACGGCGGGACGTACATGCTTCAGAAGCCAGACTGCACGgtacgcgtcg ... gtttttgcagATAGAGTTTGACGAGGAAGGCAAGGTTAGAGGCGTCACCTCCGAAGGTGAA
EST: CGGGACGTACATGCTTCAGAAGCCAGACTGCACG ATAGAGTTTGACGAGGAAGGCAAGGTTAGAGGCGTCACCTCCGAAGGTGAAEST: gi|169093396|gb|FE492700.1|FE492700
genomic: CGGGACGTACATGCTTCAGAAGCCAGACTGCACGgtacgcgtcg ... gtttttgcagATAGAGTTTGACGAGGAAGGCAAGGTTAGAGGCGTCACCTCCGAAGGTGAA
EST: TGAGTGCCGTATACGGCGGGACGTACATGCTTCAGAAGCCAGACTGCACG ATAGAGTTTGACGAGGAAGGCAAGGTTAGAGGCGTCACCTCCGAAGGTGAAEST: gi|169092637|gb|FE493657.1|FE493657
genomic: TGAGTGCCGTATACGGCGGGACGTACATGCTTCAGAAGCCAGACTGCACGgtacgcgtcg ... gtttttgcagATAGAGTTTGACGAGGAAGGCAAGGTTAGAGGCGTCACCTCCGAAGGTGAA
EST: TGAGTGCCGTATACGGCGGGACGTACATGCTTCAGAAGCCAGACTGCACG ATAGAGTTTGACGAGGAAGGCAAGGTTAGAGGCGTCACCTCCGAAGGTGAAEST: gi|169038296|gb|FE445308.1|FE445308
genomic: TGAGTGCCGTATACGGCGGGACGTACATGCTTCAGAAGCCAGACTGCACGgtacgcgtcg ... gtttttgcagATAGAGTTTGACGAGGAAGGCAAGGTTAGAGGCGTCACCTCCGAAGGTGAA
EST: TGAGTGCCGTATACGGCGGGACGTACATGCTTCAGAAGCCAGACTGCACG ATAGAGTTTGACGAGGAAGGCAAGGTTAGAGGCGTCACCTCCGAAGGTGAAEST: gi|169092638|gb|FE493658.1|FE493658
genomic: TGAGTGCCGTATACGGCGGGACGTACATGCTTCAGAAGCCAGACTGCACGgtacgcgtcg ... gtttttgcagATAGAGTTTGACGAGGAAGGCAAGGTTAGAGGCGTCACCTCCGAAGGTGAA
EST: TGAGTGCCGTATACGGCGGGACGTACATGCTTCAGAAGCCAGACTGCACG ATAGAGTTTGACGAGGAAGGCAAGGTTAGAGGCGTCACCTCCGAAGGTGAAEST: gi|169083494|gb|FE491925.1|FE491925
genomic: TGAGTGCCGTATACGGCGGGACGTACATGCTTCAGAAGCCAGACTGCACGgtacgcgtcg ... gtttttgcagATAGAGTTTGACGAGGAAGGCAAGGTTAGAGGCGTCACCTCCGAAGGTGAA
EST: TGAGTGCCGTATACGGCGGGACGTACATGCTTCAGAAGCCAGACTGCACG ATAGAGTTTGACGAGGAAGGCAAGGTTAGAGGCGTCACCTCCGAAGGTGAA
genomic: TGAGTGCCGTATACGGCGGGACGTACATGCTTCAGAAGCCAGACTGCACGgtacgcgtcg ... gtttttgcagATAGAGTTTGACGAGGAAGGCAAGGTTAGAGGCGTCACCTCCGAAGGTGAA
gtacgcgtcgcatgcgtttgcgtatcttttacatcgcgcgtgctgtttttgcagATAGAGTTTGACGAGGAAGGCAAGGTTAGAGGCGTCACCTCCGAAGGTGAAACTGCCAGGACCAAGAAAGTTGTCTGCGATCCTAGCTATGCACGAAACA
ctgttttt CT-rich tract
tatctttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgcgtcgcatgcgtttgcgtatcttttacatcgcgcgtgctgtttttgcagATAGAGTTTGACGAGGAAGGCAAGGTTAGAGGCGTCACCTCCGAAGGTGAAACTGCCAGGACCAAGAAAGTTGTCTGCGATCCTAGCTATGCACGAAACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA