Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtctgtcactttcatctcgagaccttgagacatttgctctttcttttgcagTGAAAGAGCATCGGAAACGAATAATGCTGGGCAAAAGCTGAGAGACGGGGCTAATATCAACCGTTCATTGCTTGCTTTAGCAAATTGTATCAACGCTCTT

Basic information

species Selaginella moellendorffii
transcript EFJ09876
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ09876 (Selaginella moellendorffii), 3'ss of exon 8
lower sequence: PP1S7_82V6.1 (Physcomitrella patens), 3'ss of exon 8
---------------------------------------gtttgtctgtcact-ttcatctcgagaccttgagacatttg-----ctctttcttttgcagTGAAAGAGCATCGGAAACGAATAATGCTGGGCAAAAGCTGAGAGACGGGGCTAATATCAACCGTTCATTGCTTGCTTTAGCAAATTGTATCAACGCTCTT
                                       |||| ||   || |  | |          |||    |  ||      |  || |  |||||||||||||| || || |||||||||||||| ||||||||||| ||||| || ||||||||||||||| | ||||||||||| || || ||||| ||||||
tctcatatcctcagtatttttcggtcttttgtgcatattgtttctcccacagtacttacaatatatttttgctgtagctgacacatttattttggtgcagTGAAAGAGCTTCAGAGACGAATAATGCTGGACAAAAGCTGAGGGACGGTGCGAATATCAACCGTTCACTTCTTGCTTTAGCTAACTGCATCAATGCTCTT

upper sequence: EFJ09876 (Selaginella moellendorffii), 3'ss of exon 8
lower sequence: PP1S249_44V6.1 (Physcomitrella patens), 3'ss of exon 8
-------------------------------------------------gtttgtctgtcactttcatctcgagaccttgagacatttgctctttcttttgcagTGAAAGAGCATCGGAAACGAATAATGCTGGGCAAAAGCTGAGAGACGGGGCTAATATCAACCGTTCATTGCTTGCTTTAGCAAATTGTATCAACGCTCTT
                                                 |  ||      |   |    |   |    ||| | ||||     |  |  |||||||||||||| || || ||||||||||| || || || ||||| ||||| || ||||| ||||| ||| | ||||||||||| || || |||||||| |||
gaccttcctcgatactttgaagcctcttaagctatatttttcaggaatagcatgcacagtatacttcatttatgcaactgacatattta----tcttggtgcagTGAAAGAGCTTCAGAGACGAATAATGCCGGACAGAAACTGAGGGACGGTGCAAATATTAACCGCTCACTTCTTGCTTTAGCTAACTGCATCAACGCCCTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttgtctgtcactttcatctcgagaccttgagacatttgctctttcttttgcagTGAAAGAGCATCGGAAACGAATAATGCTGGGCAAAAGCTGAGAGACGGGGCTAATATCAACCGTTCATTGCTTGCTTTAGCAAATTGTATCAACGCTCTT
                                  catttgctctttcttt  CT-rich tract
                                           tttctttt  TA-rich tract