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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcaaggtgtgtgttttctttttcttttcttagTCGTGCTGTGATCTTGACGCTATGGAGACCTTCCAGCCTGTAGAAGTGAACGTGGTTGGACATCCAATGCAGCGATTCGCCGTCTGGTTTGGCGGTTCGG

Basic information

species Selaginella moellendorffii
transcript EFJ09569
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ09569 (Selaginella moellendorffii), 3'ss of exon 8
lower sequence: PP1S85_160V6.2 (Physcomitrella patens), 3'ss of exon 7
----------------------gtcaaggtgtgtgttttct-ttttcttttcttagTCGTGCTGTGATCT-----TGACGCTATGGAGACCT---------TCCAGCCTGTAGAAGTGAACGTGGTTGGACATCCAATGCAGCGATTCGCCGTCTGGTTTGGCGGTTCGG-----------------------------
                       | ||| | |  || |  | |  |  |||   ||| || | |  |  |     ||| |  ||||  |  |           ||| | || ||||| || ||||| |||||||| ||||| |||||||| ||||||||||| || |||                              
gttctgcctagctgcctcttcttttaagctttaggtatgatatgctggtttgaaagttgttcagcaacttgtttgtgaagacatggctatttgtctacagTCTCAGGCAGTTGAAGTAAATGTGGTGGGACATCCCATGCAACGATTCGCTGTCTGGTTTGGAGGCTCGCTCTTGGCTTCCACGCCAGATTTTTATAAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcaaggtgtgtgttttctttttcttttcttagTCGTGCTGTGATCTTGACGCTATGGAGACCTTCCAGCCTGTAGAAGTGAACGTGGTTGGACATCCAATGCAGCGATTCGCCGTCTGGTTTGGCGGTTCGG
                                                  tgtgtgttttcttttt  CT-rich tract
                                   ttttctttttctttt  TA-rich tract