1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagagattcttccttcgtgttttttcccttgcccacggctggaacttattgcagGACCAACCGGAGAGATTGTGGCAGAGGCCGATGACAAAAACGAAGCGGTTCTCGTGGCGAAGTTCGATCTAAATCAGATCAAGCTCAAGCGCCAGAGCTG
species | Selaginella moellendorffii |
transcript | EFJ07601 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CGAGCACGGAGCCAGCAAGATAACATTCTACGGGCATTCCTTCATTGCGG GACCAACCGGAGAGATTGTGGCAGAGGCCGATGACAAAAACGAAGCGGTTCEST: gi|169066303|gb|FE472979.1|FE472979
genomic: CGAGCACGGAGCCAGCAAGATAACATTCTACGGGCATTCCTTCATTGCGGgtaagagatt ... cttattgcagGACCAACCGGAGAGATTGTGGCAGAGGCCGATGACAAAAACGAAGCGGTTC
EST: CGAGCACGGAGCCAGCAAGATAACATTCTACGGGCATTCCTTCATTGCGG GACCAACCGGACAGATTGTGGCEST: gi|169067004|gb|FE475981.1|FE475981
genomic: CGAGCACGGAGCCAGCAAGATAACATTCTACGGGCATTCCTTCATTGCGGgtaagagatt ... cttattgcagGACCAACCGGAGAGATTGTGGC
EST: CGAGCACGGAGCCAGCAAGATAACATTCTACGGGCATTCCTTCATTGCGG GACCAACCGGAGAGATTGTGGCAGAGGCCGATGACAAAAACGAAGCGGTTCEST: gi|169044683|gb|FE452477.1|FE452477
genomic: CGAGCACGGAGCCAGCAAGATAACATTCTACGGGCATTCCTTCATTGCGGgtaagagatt ... cttattgcagGACCAACCGGAGAGATTGTGGCAGAGGCCGATGACAAAAACGAAGCGGTTC
EST: CGAGCACGGAGCCAGCAAGATAACATTCTACGGGCATTCCTTCATTGCGG GACCAACCGGAGAGATTGTGGCAGAGGCCGATGACAAAAACGAAGCGGTTCEST: gi|169058558|gb|FE464284.1|FE464284
genomic: CGAGCACGGAGCCAGCAAGATAACATTCTACGGGCATTCCTTCATTGCGGgtaagagatt ... cttattgcagGACCAACCGGAGAGATTGTGGCAGAGGCCGATGACAAAAACGAAGCGGTTC
EST: CGAGCACGGAGCCAGCAAGATAACATTCTACGGGCATTCCTTCATTGCGG GACCAACCGGAGAGATTGTGGCAGAGGCCGATGACAAAAACGAAGCGGTTCEST: gi|169094622|gb|FE494548.1|FE494548
genomic: CGAGCACGGAGCCAGCAAGATAACATTCTACGGGCATTCCTTCATTGCGGgtaagagatt ... cttattgcagGACCAACCGGAGAGATTGTGGCAGAGGCCGATGACAAAAACGAAGCGGTTC
EST: CGAGCACGGAGCCAGCAAGATAACATTCTACGGGCATTCCTTCATTGCGG GACCAACCGGAGAGATTGTGGCAGAGGCCGATGACAAAAACGAAGCGGTTCEST: gi|169094623|gb|FE494549.1|FE494549
genomic: CGAGCACGGAGCCAGCAAGATAACATTCTACGGGCATTCCTTCATTGCGGgtaagagatt ... cttattgcagGACCAACCGGAGAGATTGTGGCAGAGGCCGATGACAAAAACGAAGCGGTTC
EST: CGAGCACGGAGCCAGCAAGATAACATTCTACGGGCATTCCTTCATTGCGG GACCAACCGGAGAGATTGTGGCAGAGGCCGATGACAAAAACGAAGCGGTTCEST: gi|169067005|gb|FE475982.1|FE475982
genomic: CGAGCACGGAGCCAGCAAGATAACATTCTACGGGCATTCCTTCATTGCGGgtaagagatt ... cttattgcagGACCAACCGGAGAGATTGTGGCAGAGGCCGATGACAAAAACGAAGCGGTTC
EST: CGAGCACGGAGCCAGCAAGATAACATTCTACGGGCATTCCTTCATTGCGG GACCAACCGGAGAGATTGTGGCAGAGGCCGATGACAAAAACGAAGCGGTTCEST: gi|169044684|gb|FE452478.1|FE452478
genomic: CGAGCACGGAGCCAGCAAGATAACATTCTACGGGCATTCCTTCATTGCGGgtaagagatt ... cttattgcagGACCAACCGGAGAGATTGTGGCAGAGGCCGATGACAAAAACGAAGCGGTTC
EST: CGAGCACGGAGCCAGCAAGATAACATTCTACGGGCATTCCTTCATTGCGG GACCAACCGGAGAGATTGTGGCAGAGGCCGATGACAAAAACGAAGCGGTTC
genomic: CGAGCACGGAGCCAGCAAGATAACATTCTACGGGCATTCCTTCATTGCGGgtaagagatt ... cttattgcagGACCAACCGGAGAGATTGTGGCAGAGGCCGATGACAAAAACGAAGCGGTTC
taagagattcttccttcgtgttttttcccttgcccacggctggaacttattgcagGACCAACCGGAGAGATTGTGGCAGAGGCCGATGACAAAAACGAAGCGGTTCTCGTGGCGAAGTTCGATCTAAATCAGATCAAGCTCAAGCGCCAGAGCTG
tgtttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagagattcttccttcgtgttttttcccttgcccacggctggaacttattgcagGACCAACCGGAGAGATTGTGGCAGAGGCCGATGACAAAAACGAAGCGGTTCTCGTGGCGAAGTTCGATCTAAATCAGATCAAGCTCAAGCGCCAGAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT