1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtacatgccattttcaatttctccttgaaactgttgctgaccagttccttcctctcttctgcagCCCACATATTGCGAGTGTGCTGGACAAGGAAAATCAAAAGGTTGGAGACGACGTGCTTTGCTCCGTCTGCGAGATGGCTGTTGTTTGGGTCCAGAACCAG
species | Selaginella moellendorffii |
transcript | EFJ06917 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CCCGACAAAGTATGTGCTCAAGCTGGGGTCTGCACTCTTCGTAATGACAA CCCACATATTGCGAGTGTGCTGGACAAGGAAAATCAAAAGGTTGGAGACGAEST: gi|169053522|gb|FE461445.1|FE461445
genomic: CCCGACAAAGTATGTGCTCAAGCTGGGGTCTGCACTCTTCGTAATGACAAgtacatgcca ... tcttctgcagCCCACATATTGCGAGTGTGCTGGACAAGGAAAATCAAAAGGTTGGAGACGA
EST: CCCGACAAAGTATGTGCTCAAGCTGGGGTCTGCACTCTTCGTAATGACAA CCCACATATTGCGAGTGTGCTGGACAAGGAAAATCAAAAGGTTGGAGACGAEST: gi|169025758|gb|FE433668.1|FE433668
genomic: CCCGACAAAGTATGTGCTCAAGCTGGGGTCTGCACTCTTCGTAATGACAAgtacatgcca ... tcttctgcagCCCACATATTGCGAGTGTGCTGGACAAGGAAAATCAAAAGGTTGGAGACGA
EST: CCCGACAAAGTATGTGCTCAAGCTGGGGTCTGCACTCTTCGTAATGACAA CCCACATATTGCGAGTGTGCTGGACAAGGAAAATCAAAAGGTTGGAGACGAEST: gi|169058293|gb|FE466034.1|FE466034
genomic: CCCGACAAAGTATGTGCTCAAGCTGGGGTCTGCACTCTTCGTAATGACAAgtacatgcca ... tcttctgcagCCCACATATTGCGAGTGTGCTGGACAAGGAAAATCAAAAGGTTGGAGACGA
EST: CCCGACAAAGTATGTGCTCAAGCTGGGGTCTGCACTCTTCGTAATGACAA CCCACATATTGCGAGTGTGCTGGACAAGGAAAATCAAAAGGTTGGAGACGAEST: gi|169048944|gb|FE456061.1|FE456061
genomic: CCCGACAAAGTATGTGCTCAAGCTGGGGTCTGCACTCTTCGTAATGACAAgtacatgcca ... tcttctgcagCCCACATATTGCGAGTGTGCTGGACAAGGAAAATCAAAAGGTTGGAGACGA
EST: CCCGACAAAGTATGTGCTCAAGCTGGGGTCTGCACTCTTCGTAATGACAA CCCACATATTGCGAGTGTGCTGGACAAGGAAAATCAAAAGGTTGGAGACGAEST: gi|169112994|gb|FE515474.1|FE515474
genomic: CCCGACAAAGTATGTGCTCAAGCTGGGGTCTGCACTCTTCGTAATGACAAgtacatgcca ... tcttctgcagCCCACATATTGCGAGTGTGCTGGACAAGGAAAATCAAAAGGTTGGAGACGA
EST: CCGACAAAGTATGTGCTCAAGCTGGGGGTCTGCACTCTTCGTAATGACAA CCCACATATTGCGAGTGTGCTGGGCAAGGAAAATCAAAAGATTGGAGACGAEST: gi|169034781|gb|FE445634.1|FE445634
genomic: CCGACAAAGTATGTGCTCAAGCT-GGGGTCTGCACTCTTCGTAATGACAAgtacatgcca ... tcttctgcagCCCACATATTGCGAGTGTGCTGGACAAGGAAAATCAAAAGGTTGGAGACGA
EST: CCCGACAAAGTATGTGCTCAAGCTGGGGTCTGCACTCTTCGTAATGACAA CCCACATATTGCGAGTGTGCTGGACAAGGAAAATCAAAAGGTTGGAGACGAEST: gi|169112989|gb|FE515469.1|FE515469
genomic: CCCGACAAAGTATGTGCTCAAGCTGGGGTCTGCACTCTTCGTAATGACAAgtacatgcca ... tcttctgcagCCCACATATTGCGAGTGTGCTGGACAAGGAAAATCAAAAGGTTGGAGACGA
EST: CCCGACAAAGTATGTGCTCAAGCTGGGGTCTGCACTCTTCGTAATGACAA CCCACATATTGCGAGTGTGCTGGACAAGGAAAATCAAAAGGTTGGAGACGAEST: gi|169047466|gb|FE455661.1|FE455661
genomic: CCCGACAAAGTATGTGCTCAAGCTGGGGTCTGCACTCTTCGTAATGACAAgtacatgcca ... tcttctgcagCCCACATATTGCGAGTGTGCTGGACAAGGAAAATCAAAAGGTTGGAGACGA
EST: CCCGACAAAGTATGTGCTCAAGCTGGGGTCTGCACTCTTCGTAATGACAA CCCACATATTGCGAGTGTGCTGGACAAGGAAAATCAAAAGGTTGGAGACGAEST: gi|169080225|gb|FE488904.1|FE488904
genomic: CCCGACAAAGTATGTGCTCAAGCTGGGGTCTGCACTCTTCGTAATGACAAgtacatgcca ... tcttctgcagCCCACATATTGCGAGTGTGCTGGACAAGGAAAATCAAAAGGTTGGAGACGA
EST: CCCGACAAAGTATGTGCTCAAGCTGGGGTCTGCACTCTTCGTAATGACAA CCCACATATTGCGAGTGTGCTGGACAAGGAAAATCAAAAGGTTGGAGACGAEST: gi|169057176|gb|FE464687.1|FE464687
genomic: CCCGACAAAGTATGTGCTCAAGCTGGGGTCTGCACTCTTCGTAATGACAAgtacatgcca ... tcttctgcagCCCACATATTGCGAGTGTGCTGGACAAGGAAAATCAAAAGGTTGGAGACGA
EST: CCCGACAAAGTATGTGCTCAAGCTGGGGTCTGCACTCTTCGTAATGACAA CCCACATATTGCGAGTGTGCTGGACAAGGAAAATCAAAAGGTTGGAGACGA
genomic: CCCGACAAAGTATGTGCTCAAGCTGGGGTCTGCACTCTTCGTAATGACAAgtacatgcca ... tcttctgcagCCCACATATTGCGAGTGTGCTGGACAAGGAAAATCAAAAGGTTGGAGACGA
attttcaatttctccttgaaactgttgctgaccagttccttcctctcttctgcagCCCACATATTGCGAGTGTGCTGGACAAGGAAAATCAAAAGGTTGGAGACGACGTGCTTTGCTCCGTCTGCGAGATGGCTGTTGTTTGGGTCCAGAACCAG
tgctgac putative branch site (score: 89)
ccagttccttcctctc CT-rich tract
aatttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacatgccattttcaatttctccttgaaactgttgctgaccagttccttcctctcttctgcagCCCACATATTGCGAGTGTGCTGGACAAGGAAAATCAAAAGGTTGGAGACGACGTGCTTTGCTCCGTCTGCGAGATGGCTGTTGTTTGGGTCCAGAACCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT