Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgcactctccttccactgcagttccatacaactcctaacacgagcctcagATGATGGAATGGTGGTATCAATCTGCCGAGGAACGAGTCATGGCCCCTACGATATATCCCCCGCCTCCACCACCACCGCCACCAAAG

Basic information

species Selaginella moellendorffii
transcript EFJ38878
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ38878 (Selaginella moellendorffii), 3'ss of exon 7
lower sequence: LOC_Os10g32960.1 (Oryza sativa), 3'ss of exon 7
---------------------------------------------------------------------------------------------------------------------------------------gtacgcactctccttccactgcagttccatacaactcctaacacgagcct---cagATGATGGAATGGTGGTATCAATCTGCCGAGGAACGAGTCATGGCCCCTACGATATATCCCCCGCCTCCACCACCACCGCCACCAAAG
                                                                                                                                         | |  | | | |    || | | |  ||        |  |  || | |    |||||||||||||||||||||||||||| |||||| || |    || || ||  |||||||||| || || || ||||| |  ||||||
gtcagctctccaatttctgctctaggaacccaagttcttcgtttgtctcggtggtcaaatttgtttttccttgcacactctctttatctttaatcttctcagttctccctacaatggatgtaatatgatgaaaaaacatgatcccccatcgtgcttc-gcttaatgttctctatctcgtgatcttatctagATGATGGAATGGTGGTATCAATCTGCTGAGGAAAGAATGTCAGCTCCGACTGTATATCCCCCACCCCCTCCTCCACCTCTGCCAAAG

upper sequence: EFJ38878 (Selaginella moellendorffii), 3'ss of exon 7
lower sequence: GRMZM2G023970_T02 (Zea mays), 3'ss of exon 6
--------------------------------------------------gtacgcactctccttccactgcagttccatacaactcctaacacgagcctcagATGATGGAATGGTGGTATCAATCTGCCGAGGAACGAGTCATGGCCCCTACGATATATCCCCCGCCTCCACCACCACCGCCACCAAAG
                                                  ||   ||       |  ||| ||||    |    ||  ||||   | ||  |||||||||| ||||||||||||||||| || ||| || |    || || ||  ||||||| || || || || || ||  | || |||
ctattagctctatccctgtggtagatatcatgtgatatgaaccacgaatagtcgacaacacaactgtact-cagtgttctctttctgataactttatcc--agATGATGGAGTGGTGGTATCAATCTGCTGAAGAAAGAATGTCAGCTCCGACTGTATATCCACCACCCCCTCCTCCTCCAACTCCTAAG

upper sequence: EFJ38878 (Selaginella moellendorffii), 3'ss of exon 7
lower sequence: GLYMA19G43700.1 (Glycine max), 3'ss of exon 5
---------------------------------------------gtacgcactctccttccactgcagttcc--atacaactcctaacacgagcct-cagATGATGGAATGGTGGTATCAATCTGCCGAGGAACGAGTCATGGCCCCTACGATATATCCCCCGCCTCCACCACCACCGCCACCAAAG
                                             || | || || |     |    | ||    | ||| | ||||     |   |  ||||||||||||||||||| |||||||| |||||  || |    || |||||  ||||||| || || || || || || |||||||||
taagtatgccttctggtgatatgctgctaaataggttagctttatgtgc-caatcactaaggagcataattattaacacatcacctatttgaattttgtagATGATGGAATGGTGGTACCAATCTGCTGAGGAGAGAATGTCAGCTCCTACAGTATATCCTCCTCCCCCTCCTCCGCCTCCACCAAAG

upper sequence: EFJ38878 (Selaginella moellendorffii), 3'ss of exon 7
lower sequence: GLYMA03G41050.1 (Glycine max), 3'ss of exon 6
-------------------------------------------gtacgcactctccttcc-actgcagttcc--atacaactcctaacacgagcct-cagATGATGGAATGGTGGTATCAATCTGCCGAGGAACGAGTCATGGCCCCTACGATATATCCCCCGCCTCCACCACCACCGCCACCAAAG
                                            |  ||    | ||    |    | ||    | ||| | ||||     |   |  ||||||||||||||||||| || |||||||||||  || |    || |||||  ||||||| || || || || || || |||||||||
taagtatgctttctggtgatatgctgttaaataggttagctttatgtgcttattactaaggagcataattattaacacatcacctatttgaattatgtagATGATGGAATGGTGGTACCAGTCTGCCGAGGAGAGAATGTCAGCTCCTACAGTATATCCTCCACCCCCTCCTCCTCCACCACCAAAG

upper sequence: EFJ38878 (Selaginella moellendorffii), 3'ss of exon 7
lower sequence: AT3G04460.1 (Arabidopsis thaliana), 3'ss of exon 7
-----------------------------------gtacgcactctccttccactgcagtt--ccatacaactc-ctaacacgagcctc---------agATGATGGAATGGTGGTATCAATCTGCCGAGGAACGAGTCATGGCCCCTACGATATATCCCCCGCCTCCACCACCACCGCCACCAAAG
                                      ||||   || ||    || |  |   |||  | |||  |  |  | |  |          ||||||||||||||||||||||||| || || ||  || |    || || ||  | || || || |||||||| || ||  | ||||||
atacttatggcgtttttgactctcggtagatttttcatcgcataatcatttagttgaacctaaacatctagctcattttcgtgtgtttttggttttgtagATGATGGAATGGTGGTATCAATCCGCTGAAGAGAGATTATCAGCTCCAACAGTGTACCCTCCACCTCCACCTCCTCCAGCCCCAAAG

upper sequence: EFJ38878 (Selaginella moellendorffii), 3'ss of exon 7
lower sequence: Vv14s0036g01130.t01 (Vitis vinifera), 3'ss of exon 7
----------------------------------------gtacgcactctccttccactgcagtt--ccat--aca-actcctaacacgagc--ctcagATGATGGAATGGTGGTATCAATCTGCCGAGGAACGAGTCATGGCCCCTACGATATATCCCCCGCCTCCACCACCACCGCCACCAAAG
                                        ||      | |  |     |  ||||  ||||  |||  ||  | |   || |  ||||||||||||| |||||||| |||||||| |||||| || |    || || ||  |||| ||||| || || || || || || ||||||
ttgacatgagttataatcatggtaggattctgttcttgctgtttaacatgttttgtagatctagttttccattgacatgctattgatttgaactactcagATGATGGAGTGGTGGTACCAATCTGCTGAGGAAAGAATGTCAGCTCCAACTGTATACCCCCCACCACCTCCCCCTCCACCTCCAAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169056507|gb|FE464915.1|FE464915
EST:     TTCTGGACTATGCTCAAACAGGCCTTATTGCCGGAGTATTTCTCTTCAAG                         ATGATGGAATGGTGGTATCAATCTGCCGAGGAACGAGTCATGGCCCCTACG
genomic: TTCTGGACTATGCTCAAACAGGCCTTATTGCCGGAGTATTTCTCTTTAAGgtacgcactc ... cgagcctcagATGATGGAATGGTGGTATCAATCTGCCGAGGAACGAGTCATGGCCCCTACG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtacgcactctccttccactgcagttccatacaactcctaacacgagcctcagATGATGGAATGGTGGTATCAATCTGCCGAGGAACGAGTCATGGCCCCTACGATATATCCCCCGCCTCCACCACCACCGCCACCAAAG
                                     tcctaac  putative branch site (score: 1)