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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtactattttaccatggctttcttatagttttgtaatttacagGCTCGCGAAGTCAGCGGCTGACTTGAATCTTAAGCTTATGAAATGGCGCAGTCTTCCGTCCTTAAATCTCTTGCTACTGTCCAAGACGAAATGTTTGCTT

Basic information

species Selaginella moellendorffii
transcript EFJ38728
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169101229|gb|FE501960.1|FE501960
EST:     GAACCTTCTGCGCGATCAGTCGATCTTTCTTCCTTAATGAATCCTGATAT                         GCTCGCGAAGTCAGCGGCTGACTTGAATCTTAAGCTTATGAAATGGCGCAG
genomic: GAACCTTCTGCGCGATCAGTCGATCTTTCTTCCTTAATGAATCCTGATATgtacgtacta ... taatttacagGCTCGCGAAGTCAGCGGCTGACTTGAATCTTAAGCTTATGAAATGGCGCAG
EST: gi|169077707|gb|FE485385.1|FE485385
EST:     GAACCTTCTGCGCGATCAGTCGATCTTTCTTCCTTAATGAATCCTGATAT                         GCTCGCGAAGTCAGCGGCTGACTTGAATCTTNNAAGCT-ATGAA-TGGCGC
genomic: GAACCTTCTGCGCGATCAGTCGATCTTTCTTCCTTAATGAATCCTGATATgtacgtacta ... taatttacagGCTCGCGAAGTCAGCGGCTGACTTGAATCTT--AAGCTTATGAAATGGCGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtacgtactattttaccatggctttcttatagttttgtaatttacagGCTCGCGAAGTCAGCGGCTGACTTGAATCTTAAGCTTATGAAATGGCGCAGTCTTCCGTCCTTAAATCTCTTGCTACTGTCCAAGACGAAATGTTTGCTT
                                             tttcttatagttttgt  TA-rich tract