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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgagaaaaataaaaagctttctggattgaatctatggttttttgtgactagATTTTTGCGAAGAAAGGCATCATTGTGTTGCCAGACATCTTGGCAAACTCAGGAGGTGTCACAGTGAGCTACTTCGAATGGGTACAG

Basic information

species Selaginella moellendorffii
transcript EFJ36429
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ06180 (Selaginella moellendorffii), 3'ss of exon 7
lower sequence: LOC_Os03g58040.1 (Oryza sativa), 3'ss of exon 8
---------------------------------------gtatgagaaaaataaaaagctt-tctggattgaa---tctatggttttttgtgactagATTTTTGCGAAGAAAGGCATCATTGTGTTGCCAGACATCTTGGCAAACTCAGGAGGTGTCACAGTGAGCTACTTCGAATGGGTACAG
                                         |  |  |||||  |    || |||| | ||     ||| ||  ||  |    | ||||  |  | ||||||||| |  |  |  | ||||||||| | || ||||| || ||||||||||||||||||||||| ||||| |||
gcaagcacatctgacagtatctggcagacaaataccccaacagcaacaaaatgtaccatttgtctgaaatgctttctctctgaattccttctgc-agATCCTGTCCAAGAAAGGCGTTCTCATTCTTCCAGACATCCTCGCGAACTCCGGTGGTGTCACAGTGAGCTACTTCGAGTGGGTTCAG

upper sequence: EFJ06180 (Selaginella moellendorffii), 3'ss of exon 7
lower sequence: GRMZM2G178415_T05 (Zea mays), 3'ss of exon 8
-----------gtatgagaaaaataaaaagctttctggattg------aatc-------tatggttttttgtgactagATTTTTGCGAAGAAAGGCATCATTGTGTTGCCAGACATCTTGGCAAACTCAGGAGGTGTCACAGTGAGCTACTTCGAATGGGTACAG
           |    | | |||   |  |||||||| | ||       |||       |||    ||   |  | ||||  |  | ||||||||| || |  |  | || |||||  |||| ||||| || || |||||||||||||||||||| |||||||| 
gcaagcccgtagctcaaaacaaaccgactgctttctgcaatgttttctgatcccctctgtatcccgttccatccccagATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCTGGTGGCGTCACAGTGAGCTACTTCGAGTGGGTACAA

upper sequence: EFJ06180 (Selaginella moellendorffii), 3'ss of exon 7
lower sequence: GLYMA19G28770.1 (Glycine max), 3'ss of exon 7
----------------------------------gtatgagaaaaataaaaagctttctggattgaatctatggttttttgtgactagATTTTTGCGAAGAAAGGCATCATTGTGTTGCCAGACATCTTGGCAAACTCAGGAGGTGTCACAGTGAGCTACTTCGAATGGGTACAG
                                    |  ||||| |  ||| ||  | | | |   | |||   |  |   |  | ||||| |   |||||||||  |  || |  | |||||||| || |||||||||||||| || ||||| |||||||| || ||||| |||
gttagtttagattttctctttccttcccttcttcaaacaagaaagaagaaatgcactattgtt---aactaccttcctaacttgc-agATTCTGAAGAAGAAAGGGGTTGTTATCCTCCCAGACATATTTGCAAACTCAGGAGGCGTTACAGTTAGCTACTTTGAGTGGGTCCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtatgagaaaaataaaaagctttctggattgaatctatggttttttgtgactagATTTTTGCGAAGAAAGGCATCATTGTGTTGCCAGACATCTTGGCAAACTCAGGAGGTGTCACAGTGAGCTACTTCGAATGGGTACAG
                                         ttttttgt  CT-rich tract
        aaaaataaaaagcttt  TA-rich tract