1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtattgttttagcagtacaccctgttagtgctaaattcctttgctgctcagTTGGTCGATTGGGAGGCCGGAGGCTATTTGGCAAGCGATAAGCCTCTTCCAAGAGGCGAAATCGTGATCGGCGGGCCAAGCGTAACCATCGGCTATTTCA
species | Selaginella moellendorffii |
transcript | EFJ35799 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ATACATCCGTTGGTCGTGTAGGCCCTCCAGTTCCTCATTGTTACGTGAAG TTGGTCGATTGGGAGGCCGGAGGCTATTTGGCAAGCGATAAGCCTCTTTCCEST: gi|169020473|gb|FE431720.1|FE431720
genomic: ATACATCCGTTGGTCGTGTAGGCCCTCCAGTTCCTCATTGTTACGTGAAGgtattgtttt ... tgctgctcagTTGGTCGATTGGGAGGCCGGAGGCTATTTGGCAAGCGATAAGCCTCTT-CC
EST: GTTACGGGAAG TTGGTCGATGGGGAGGCCGGAGGCTATTTGGCAAGCGATAAGCCTCTTCCAEST: gi|169029948|gb|FE437008.1|FE437008
genomic: GTTACGTGAAGgtattgtttt ... tgctgctcagTTGGTCGATTGGGAGGCCGGAGGCTATTTGGCAAGCGATAAGCCTCTTCCA
EST: ATACATCCGTTGGTCGTGTAGGCCCTCCAGTTCCTCATTGTTACGTGAAG TTGGTCGATTGGGAGGCCGGAGGCTATTTGGCAAGCGATAAGCCTCTTCCAEST: gi|169038462|gb|FE446163.1|FE446163
genomic: ATACATCCGTTGGTCGTGTAGGCCCTCCAGTTCCTCATTGTTACGTGAAGgtattgtttt ... tgctgctcagTTGGTCGATTGGGAGGCCGGAGGCTATTTGGCAAGCGATAAGCCTCTTCCA
EST: ATACATCCGTTGGTCGTGTAGGCCCTCCAGTTCCTCATTGTTACCTGAAG TTGGTCGATTGGGAGGCCGGAGGCTATTTGGCAAGCGATAAGCCTCTTCCAEST: gi|169066418|gb|FE474641.1|FE474641
genomic: ATACATCCGTTGGTCGTGTAGGCCCTCCAGTTCCTCATTGTTACGTGAAGgtattgtttt ... tgctgctcagTTGGTCGATTGGGAGGCCGGAGGCTATTTGGCAAGCGATAAGCCTCTTCCA
EST: ATACATCCGTTGGTCGTGTAGGCCCTCCAGTTCCTCATTGTTACGTGAAG TTGGTCGATTGGGAGGCCGGAGGCTATTTGGCAAGCGATAAGCCTCTTCCAEST: gi|169102019|gb|FE507803.1|FE507803
genomic: ATACATCCGTTGGTCGTGTAGGCCCTCCAGTTCCTCATTGTTACGTGAAGgtattgtttt ... tgctgctcagTTGGTCGATTGGGAGGCCGGAGGCTATTTGGCAAGCGATAAGCCTCTTCCA
EST: ATACATCCGTTGGTCGTGTAGGCCCTCCAGTTCCTCATTGTTACGTGAAG TTGGTCGATTGGGAGGCCGGAGGCTATTTGGCAAGCGATAAGCCTCTTCCAEST: gi|169074866|gb|FE483787.1|FE483787
genomic: ATACATCCGTTGGTCGTGTAGGCCCTCCAGTTCCTCATTGTTACGTGAAGgtattgtttt ... tgctgctcagTTGGTCGATTGGGAGGCCGGAGGCTATTTGGCAAGCGATAAGCCTCTTCCA
EST: ATACATCCGTTGGTCGTGTAGGCCCTCCAGTTCCTCATTGTTACGTGAAG TTGGTCGATTGGGAGGCCGGAGGCTATTTGGCAAGCGATAAGCCTCTTCCAEST: gi|169032302|gb|FE439351.1|FE439351
genomic: ATACATCCGTTGGTCGTGTAGGCCCTCCAGTTCCTCATTGTTACGTGAAGgtattgtttt ... tgctgctcagTTGGTCGATTGGGAGGCCGGAGGCTATTTGGCAAGCGATAAGCCTCTTCCA
EST: ATACATCCGTTGGTCGTGTAGGCCCTCCAGTTCCTCATTGTTACGTGAAG TTGGTCGATTGGGAGGCCGGAGGCTATTTGGCAAGCGATAAGCCTCTTCCA
genomic: ATACATCCGTTGGTCGTGTAGGCCCTCCAGTTCCTCATTGTTACGTGAAGgtattgtttt ... tgctgctcagTTGGTCGATTGGGAGGCCGGAGGCTATTTGGCAAGCGATAAGCCTCTTCCA
gtattgttttagcagtacaccctgttagtgctaaattcctttgctgctcagTTGGTCGATTGGGAGGCCGGAGGCTATTTGGCAAGCGATAAGCCTCTTCCAAGAGGCGAAATCGTGATCGGCGGGCCAAGCGTAACCATCGGCTATTTCA
tgctaaa putative branch site (score: 23)
ttcctttgctgctc CT-rich tract
tattgtttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattgttttagcagtacaccctgttagtgctaaattcctttgctgctcagTTGGTCGATTGGGAGGCCGGAGGCTATTTGGCAAGCGATAAGCCTCTTCCAAGAGGCGAAATCGTGATCGGCGGGCCAAGCGTAACCATCGGCTATTTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG