Sequence
atgc intronic sequence ATGC exonic sequencegtaaggttttaaaatcgttacgtgaaacaaaacttagctatggtatggactctgctctgtcagGTATTTAGCACCTGAATATACTCAAAGTGGTCAGATCACAGAAAAGGCAGACGTTTACTCGTTTGGAATAGTGCTCTTGGAGCTTGTAACTGGCCGCAAG
Basic information
species | Selaginella moellendorffii |
transcript | EFJ34463 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: EFJ34463 (Selaginella moellendorffii), 3'ss of exon 7
lower sequence: GLYMA08G03340.2 (Glycine max), 3'ss of exon 5
------gtaagg----ttttaaaatcgttacgtga--aacaaaacttagctatggtatggactctgctc--tgtcagGTATTTAGCACCTGAATATACTCAAAGTGGTCAGATCACAGAAAAGGCAGACGTTTACTCGTTTGGAATAGTGCTCTTGGAGCTTGTAACTGGCCGCAAG
|| | |||| || | ||| | | | ||| | | | || | | ||||||||| || || |||||| ||||||||||||| || || ||||| || ||||| ||||||||||| ||||| | |||||||||| || || || ||
gtagtgccaatgtcttttttcccattttcttttgattagttgtaaaaaatgatgatgtaagccttggttattcacagGTATTTGGCGCCAGAATATGCTCAAAGTGGTCAAATTACTGAAAAAGCTGACGTGTACTCGTTTGGGATAGTATTACTGGAGCTTGTCACAGGACGGAAA
upper sequence: EFJ34463 (Selaginella moellendorffii), 3'ss of exon 7
lower sequence: GLYMA05G36280.1 (Glycine max), 3'ss of exon 6
----------gtaaggttttaaaatcgttacgtga--aacaaaacttagctatggtatggactctgctctgtca--gGTATTTAGCACCTGAATATACTCAAAGTGGTCAGATCACAGAAAAGGCAGACGTTTACTCGTTTGGAATAGTGCTCTTGGAGCTTGTAACTGGCCGCAAG
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gtagtgccaatttcatttttcccattttcttttgattagttgtaaaaaatgatgatgtaaaccttggttattcatagGTATTTGGCGCCAGAATATGCTCAAAGTGGTCAAATTACTGAAAAAGCTGACGTGTACTCGTTTGGGATAGTATTACTGGAGCTTGTCACAGGACGGAAA
upper sequence: EFJ34463 (Selaginella moellendorffii), 3'ss of exon 7
lower sequence: PP1S336_36V6.1 (Physcomitrella patens), 3'ss of exon 7
---------------------------------------------------------------gtaaggttttaaaatcgttacgtgaaacaaaacttagctatggtatggactctgctctgtcagGTATTTAGCACCTGAATATACTCAAAGTGGTCAGATCACAGAAAAGGCAGACGTTTACTCGTTTGGAATAGTGCTCTTGGAGCTTGTAACTGGCCGCAAG
| || || | | || | | | | | | | ||| | || || | | ||||| || || || ||||||||||| ||||||||| ||||| ||||||||||| || |||||||| | ||||| |||||||| | || || |||||
gtatatgtgatcacgctcagatttattctcttctgataacccaaatctttattggttatacattccaccttgtagactgatttccttcatcgctaataatttattgattgccaaatgggttat-agGTACTTGGCTCCAGAATATACTCAGCATGGTCAGATTACAGACAAGGCAGACGTGTATTCGTTTGGTGTTGTGCTTCTGGAGCTTATCACGGGTCGCAAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttaaaatcgttacgtgaaacaaaacttagctatggtatggactctgctctgtcagGTATTTAGCACCTGAATATACTCAAAGTGGTCAGATCACAGAAAAGGCAGACGTTTACTCGTTTGGAATAGTGCTCTTGGAGCTTGTAACTGGCCGCAAG
ctctgctct CT-rich tract
aaacaaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaggttttaaaatcgttacgtgaaacaaaacttagctatggtatggactctgctctgtcagGTATTTAGCACCTGAATATACTCAAAGTGGTCAGATCACAGAAAAGGCAGACGTTTACTCGTTTGGAATAGTGCTCTTGGAGCTTGTAACTGGCCGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT