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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtaagctttgcctctttttactcatgactgtcttgtctcgtagGTGACCCCCGATAAAGTATGTGCTCAAGCTGGGGTCTGCACTCTTCGTAATGACAA

Basic information

species Selaginella moellendorffii
transcript EFJ34432
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169048187|gb|FE455459.1|FE455459
EST:     TGGTCGTTACTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCACAG                         GTGACGCCCGACAAAGTATGTGCTCAAGCTGGGGTCTGCACTCTTCGTAAT
genomic: TGGTCGTTGCTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCACAGgttagtaagc ... tgtctcgtagGTGACCCCCGATAAAGTATGTGCTCAAGCTGGGGTCTGCACTCTTCGTAAT
EST: gi|169039488|gb|FE449163.1|FE449163
EST:     TGGTCGTTACTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCACAG                         GTGACGCCCGACAAAGTATGTGCTCAAGCTGGGGTCTGCACTCTTCGTAAT
genomic: TGGTCGTTGCTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCACAGgttagtaagc ... tgtctcgtagGTGACCCCCGATAAAGTATGTGCTCAAGCTGGGGTCTGCACTCTTCGTAAT
EST: gi|169030852|gb|FE439797.1|FE439797
EST:     TGGTCGTTGCTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCACAG                         GTGACCCCCGATAAAGTATGTGCTCAAGCTGGGGTCTGCACTCTTCGTAAT
genomic: TGGTCGTTGCTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCACAGgttagtaagc ... tgtctcgtagGTGACCCCCGATAAAGTATGTGCTCAAGCTGGGGTCTGCACTCTTCGTAAT
EST: gi|169043989|gb|FE451575.1|FE451575
EST:     TGGTCGTTACTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCACAG                         GTGACGCCCGACAAAGTATGTGCTCAAGCTGGGGTCTGCACTCTTCGTAAT
genomic: TGGTCGTTGCTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCACAGgttagtaagc ... tgtctcgtagGTGACCCCCGATAAAGTATGTGCTCAAGCTGGGGTCTGCACTCTTCGTAAT
EST: gi|169043990|gb|FE451576.1|FE451576
EST:     TGGTCGTTACTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCACAG                         GTGACGCCCGACAAAGTATGTGCTCAAGCTGGGGTCTGCACTCTTCGTAAT
genomic: TGGTCGTTGCTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCACAGgttagtaagc ... tgtctcgtagGTGACCCCCGATAAAGTATGTGCTCAAGCTGGGGTCTGCACTCTTCGTAAT
EST: gi|169072916|gb|FE482344.1|FE482344
EST:     TGGTCGTTACTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCACAG                         GTGACGCCCGACAAAGTATGTGCTCAAGCTGGGGTCTGCACTCTTCGTAAT
genomic: TGGTCGTTGCTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCACAGgttagtaagc ... tgtctcgtagGTGACCCCCGATAAAGTATGTGCTCAAGCTGGGGTCTGCACTCTTCGTAAT
EST: gi|169043410|gb|FE451854.1|FE451854
EST:     TGGTCGTTGCTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCACAG                         GTGACACCCGACAAAGTATGTGCTCAAGCTGGGGTCTGCACTCTTCGTAAT
genomic: TGGTCGTTGCTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCACAGgttagtaagc ... tgtctcgtagGTGACCCCCGATAAAGTATGTGCTCAAGCTGGGGTCTGCACTCTTCGTAAT
EST: gi|169032351|gb|FE440908.1|FE440908
EST:     TGGTCGTTACTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCACAG                         GTGACGCCCGACAAAGTATGTGCTCAAGCTGGGGTCTGCACTCTTCGTAAT
genomic: TGGTCGTTGCTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCACAGgttagtaagc ... tgtctcgtagGTGACCCCCGATAAAGTATGTGCTCAAGCTGGGGTCTGCACTCTTCGTAAT
EST: gi|169108565|gb|FE510780.1|FE510780
EST:     TGGTCGTTGCTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCACAG                         GTGACACCCGACAAAGTATGTGCTCAAGCTGGGGTCTGCACTCTTCGTAAT
genomic: TGGTCGTTGCTCAGTATGGTGACTTGATTGTGGAACTTCTTCTTGCACAGgttagtaagc ... tgtctcgtagGTGACCCCCGATAAAGTATGTGCTCAAGCTGGGGTCTGCACTCTTCGTAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttagtaagctttgcctctttttactcatgactgtcttgtctcgtagGTGACCCCCGATAAAGTATGTGCTCAAGCTGGGGTCTGCACTCTTCGTAATGACAA
                                                 tcttgtctc  CT-rich tract
                        tcttttta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttagtaagctttgcctctttttactcatgactgtcttgtctcgtagGTGACCCCCGATAAAGTATGTGCTCAAGCTGGGGTCTGCACTCTTCGTAATGACAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG