1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtacataatacgttatgatacctttttgaagttttaagcccttcgcttgtagGCCACCGAGCAAGACTACGAAAGAGAAAAATTGAACGAAAGAATAGCTAAATTGTCTGGAGGAGTTGCTGTAATCCAG
species | Selaginella moellendorffii |
transcript | EFJ33580 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CACAGGAAGCCGTCAGTAAGCGTGTCAACCAAATAAAAAATCAGCTCGAG GCCACCGAGCAAGACTACGAAAGAGAAAAATTGAACGAAAGAATAGCTAAAEST: gi|169098700|gb|FE500238.1|FE500238
genomic: CACAGGAAGCCGTCAGTAAGCGTGTCAACCAAATAAAAAATCAGCTCGAGgtacataata ... tcgcttgtagGCCACCGAGCAAGACTACGAAAGAGAAAAATTGAACGAAAGAATAGCTAAA
EST: ACAGGAAGCCGTCAGCAAGCGTGTCAACC-AATNNNNNNNTCAGCTCGAG GCCACCGAGCAAGACTACGAAAGAGAAAAATTGAACGAAAGAATAGCTAAAEST: gi|169030365|gb|FE437828.1|FE437828
genomic: ACAGGAAGCCGTCAGTAAGCGTGTCAACCAAAT-AAAAAATCAGCTCGAGgtacataata ... tcgcttgtagGCCACCGAGCAAGACTACGAAAGAGAAAAATTGAACGAAAGAATAGCTAAA
EST: CACAGGAAGCCGTCAGCAAGCGTGTCAACCAAATAAAAAATCAGCTCGAG GCCACCGAGCAAGACTACGAAAGAGAAAAATTGAACGAAAGAATAGCTAAAEST: gi|169081608|gb|FE491262.1|FE491262
genomic: CACAGGAAGCCGTCAGTAAGCGTGTCAACCAAATAAAAAATCAGCTCGAGgtacataata ... tcgcttgtagGCCACCGAGCAAGACTACGAAAGAGAAAAATTGAACGAAAGAATAGCTAAA
EST: CACAGGAAGCCGTCAGTAAGCGTGTCAACCAAATAAAAAATCAGCTCGAG GCCACCGAGCAAGACTACGAAAGAGAAAAATTGAACGAAAGAATAGCTAAAEST: gi|169021473|gb|FE428560.1|FE428560
genomic: CACAGGAAGCCGTCAGTAAGCGTGTCAACCAAATAAAAAATCAGCTCGAGgtacataata ... tcgcttgtagGCCACCGAGCAAGACTACGAAAGAGAAAAATTGAACGAAAGAATAGCTAAA
EST: CACAGGAAGCCGTCAGCAAGCGTGTCAACCAAATAAAAAATCAGCTCGAG GCCACCGAGCAAGACTACGAAAGAGAAAAATTGAACGAAAGAATAGCTAAAEST: gi|169028066|gb|FE435424.1|FE435424
genomic: CACAGGAAGCCGTCAGTAAGCGTGTCAACCAAATAAAAAATCAGCTCGAGgtacataata ... tcgcttgtagGCCACCGAGCAAGACTACGAAAGAGAAAAATTGAACGAAAGAATAGCTAAA
EST: GGAAGCCGTCAGCAAGCGTGTCAACCAAATAAAAAATCAGCTCGAG GCCACCGAGCAAGACTACGAAAGAGAAAAATTGAACGAAAGAATAGCTAAAEST: gi|169024240|gb|FE435218.1|FE435218
genomic: GGAAGCCGTCAGTAAGCGTGTCAACCAAATAAAAAATCAGCTCGAGgtacataata ... tcgcttgtagGCCACCGAGCAAGACTACGAAAGAGAAAAATTGAACGAAAGAATAGCTAAA
EST: CAAATAAAAAATCAGCTCGAG GCCACCGAGCAAGACTACGAAAGAGAAAAATTGAACGAAAGAATAGCTAAA
genomic: CAAATAAAAAATCAGCTCGAGgtacataata ... tcgcttgtagGCCACCGAGCAAGACTACGAAAGAGAAAAATTGAACGAAAGAATAGCTAAA
gtacataatacgttatgatacctttttgaagttttaagcccttcgcttgtagGCCACCGAGCAAGACTACGAAAGAGAAAAATTGAACGAAAGAATAGCTAAATTGTCTGGAGGAGTTGCTGTAATCCAG
cccttcgctt CT-rich tract
tttttgaagttttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacataatacgttatgatacctttttgaagttttaagcccttcgcttgtagGCCACCGAGCAAGACTACGAAAGAGAAAAATTGAACGAAAGAATAGCTAAATTGTCTGGAGGAGTTGCTGTAATCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG