1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtacctccattattttctcttttctctttctcttacacgtttctgcaactacagGAGCTAAGTATTCCTGCTGTAAACTTCGTAAATTGGCTTCAAGATGTCGCTTCATGGAGGGAGCCATTCAAGGCAGCAATGTTTTGTCTGCTCTTCTCGT
species | Selaginella moellendorffii |
transcript | EFJ32436 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GCGTGAGAG-TGNAGGGAATCGGTACCAATGTCGCTATTATGAAG GAGCTAAGTATTCCTGCTGTAAACTTCGTAAATTGGCTTCAAGATGTCGCTEST: gi|169065936|gb|FE475384.1|FE475384
genomic: GCGTGAGAGTTG-AGGGAATCGGTACCAATGTCGCTATTATGAAGgtacctccat ... gcaactacagGAGCTAAGTATTCCTGCTGTAAACTTCGTAAATTGGCTTCAAGATGTCGCT
EST: GGTACCAATGTCGCTATTATGAAG GAGCTAAGTATTCCTGCTGTAAACTTCGTAAATTGGCTTCAAGATGTCGCTEST: gi|169035440|gb|FE444378.1|FE444378
genomic: GGTACCAATGTCGCTATTATGAAGgtacctccat ... gcaactacagGAGCTAAGTATTCCTGCTGTAAACTTCGTAAATTGGCTTCAAGATGTCGCT
EST: TCGAAGGCGTGAGAGTTGAGGGAATCGGTACCAATGTCGCTATTATGAAG GAGCTAAGTATTCCTGCTGTAAACTTCGTAAATTGGCTTCAAGATGTCGCTEST: gi|169033927|gb|FE441959.1|FE441959
genomic: TCGAAGGCGTGAGAGTTGAGGGAATCGGTACCAATGTCGCTATTATGAAGgtacctccat ... gcaactacagGAGCTAAGTATTCCTGCTGTAAACTTCGTAAATTGGCTTCAAGATGTCGCT
EST: TCGAAGGCGTGAGAGTTGAGGGAATCGGTACCAATGTCGCTATTATGAAG GAGCTAAGTATTCCTGCTGTAAACTTCGTAAATTGGCTTCAAGATGTCGCTEST: gi|169081856|gb|FE490524.1|FE490524
genomic: TCGAAGGCGTGAGAGTTGAGGGAATCGGTACCAATGTCGCTATTATGAAGgtacctccat ... gcaactacagGAGCTAAGTATTCCTGCTGTAAACTTCGTAAATTGGCTTCAAGATGTCGCT
EST: TCGAAGGCGTGAGAGTTGAGGGAATCGGTACCAATGTCGCTATTATGAAG GAGCTAAGTATTCCTGCTGTAAACTTCGTAAATTGGCTTCAAGATGTCGCTEST: gi|169020249|gb|FE428272.1|FE428272
genomic: TCGAAGGCGTGAGAGTTGAGGGAATCGGTACCAATGTCGCTATTATGAAGgtacctccat ... gcaactacagGAGCTAAGTATTCCTGCTGTAAACTTCGTAAATTGGCTTCAAGATGTCGCT
EST: TCGAAGGCGTGAGAGTTGAGGGAATCGGTACCAATGTCGCTATTATGAAG GAGCTAAGTATTCCTGCTGTAAACTTCGTAAATTGGCTTCAAGATGTCGCTEST: gi|169081181|gb|FE490783.1|FE490783
genomic: TCGAAGGCGTGAGAGTTGAGGGAATCGGTACCAATGTCGCTATTATGAAGgtacctccat ... gcaactacagGAGCTAAGTATTCCTGCTGTAAACTTCGTAAATTGGCTTCAAGATGTCGCT
EST: TCGGTACCAATGTCGCTATTATGAAG GAGCTAAGTATTCCTGCTGTAAACTTCGTAAATTGGCTTCAAGATGTCGCT
genomic: TCGGTACCAATGTCGCTATTATGAAGgtacctccat ... gcaactacagGAGCTAAGTATTCCTGCTGTAAACTTCGTAAATTGGCTTCAAGATGTCGCT
gtacctccattattttctcttttctctttctcttacacgtttctgcaactacagGAGCTAAGTATTCCTGCTGTAAACTTCGTAAATTGGCTTCAAGATGTCGCTTCATGGAGGGAGCCATTCAAGGCAGCAATGTTTTGTCTGCTCTTCTCGT
ctcttac putative branch site (score: 27)
ttattttctcttttct CT-rich tract
attattttctctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacctccattattttctcttttctctttctcttacacgtttctgcaactacagGAGCTAAGTATTCCTGCTGTAAACTTCGTAAATTGGCTTCAAGATGTCGCTTCATGGAGGGAGCCATTCAAGGCAGCAATGTTTTGTCTGCTCTTCTCGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG