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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggaaactttttaagctgattgctgcttatttcgatcgtggtatggcagTCAGATAATTTCATTCATGGTGATCTCCATCCTGGCAATATGTTCGTAAAGCTGGGTAAAAAGGTTCCTCAATTGATACTATTAGATGTGGGAATGACAG

Basic information

species Selaginella moellendorffii
transcript EFJ32376
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169095209|gb|FE499340.1|FE499340
EST:     ATTCTCAGTTGGCCAGGCTTGGGAGTAGTCTACTTTTGAAGATGTTGTTG                         TCAGATAATTTCATTCATGGTGATCTCCATCCTGGCAATATGTTCGTAAAG
genomic: ATTCTCAGTTGGCCAGGCTTGGGAGTAGTCTACTTTTGAAGATGTTGTTGgtatggaaac ... ggtatggcagTCAGATAATTTCATTCATGGTGATCTCCATCCTGGCAATATGTTCGTAAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtatggaaactttttaagctgattgctgcttatttcgatcgtggtatggcagTCAGATAATTTCATTCATGGTGATCTCCATCCTGGCAATATGTTCGTAAAGCTGGGTAAAAAGGTTCCTCAATTGATACTATTAGATGTGGGAATGACAG
                   agctgat  putative branch site (score: 4)
            aaactttttaa  TA-rich tract