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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagaaaaaacactgttattttctagtgctcactgtttcctctcaaccagATTCATAACATACGACGGGACATGGTTAATGTTCTCAAGGAAAATTTTTCACATTTGCCGCTTACTTACTCGATCGGTGGCCAGATTAGTTTCGAT

Basic information

species Selaginella moellendorffii
transcript EFJ31680
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169099379|gb|FE500995.1|FE500995
EST:     GACGTAATTGTAGCCAGGAAGAACGCGATGCTTTCGAGCAATATGACAAG                         ATTCATAACATACGACGGGACATGGTTAATGTTCTCAAGGAAAAGTTTTCA
genomic: GACGTAATTGTAGCCAGGAAGAACGCGATGCTTTCGAGCAATATGACAAGgtaaagaaaa ... tctcaaccagATTCATAACATACGACGGGACATGGTTAATGTTCTCAAGGAAAATTTTTCA
EST: gi|169099378|gb|FE500994.1|FE500994
EST:     GACGTAATTGTAGCCAGGAAGAACGCGATGCTTTCGAGCAATATGACAAG                         ATTCATAACATACGACGGGACATGGTTAATGTTCTCAAGGAAAAGTTTTCA
genomic: GACGTAATTGTAGCCAGGAAGAACGCGATGCTTTCGAGCAATATGACAAGgtaaagaaaa ... tctcaaccagATTCATAACATACGACGGGACATGGTTAATGTTCTCAAGGAAAATTTTTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaaagaaaaaacactgttattttctagtgctcactgtttcctctcaaccagATTCATAACATACGACGGGACATGGTTAATGTTCTCAAGGAAAATTTTTCACATTTGCCGCTTACTTACTCGATCGGTGGCCAGATTAGTTTCGAT
                               tgctcac  putative branch site (score: 2)
                                 ctcactgtttcctctc  CT-rich tract
     aaagaaaaaa  TA-rich tract