1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaaacttgaaacggaacatcctagatatttcttacgcctgtctttaaatttatttccagTTTATCATAAACAATGGAGCGCTGCCATATTTGTTACATCTTCTTACCAATGTTTACAAGAAGAGCATAAAAAAGGAGGCTTGCTGGACAATCTCGAACA
species | Selaginella moellendorffii |
transcript | EFJ31557 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTCTTCGTACGGTGGGAAACATTGTGACTGGTGACGATGTCCAAACGCAG TTTATCANTAA-CAATGGAGCGCTGCCATATTTEST: gi|169030898|gb|FE438166.1|FE438166
genomic: CTCTTCGTACGGTGGGAAACATTGTGACTGGTGACGATGTCCAAACGCAGgtaaacttga ... ttatttccagTTTATCA-TAAACAATGGAGCGCTGCCATATTT
EST: CTCTTCGTACGGTGGGAAACATTGTGACTGGTGACGATGTCCAAACGCAG TTTATCATANACAATGGAGCGCTGCCATATTTGTTACATCTTCTTACCAATEST: gi|169072117|gb|FE478729.1|FE478729
genomic: CTCTTCGTACGGTGGGAAACATTGTGACTGGTGACGATGTCCAAACGCAGgtaaacttga ... ttatttccagTTTATCATAAACAATGGAGCGCTGCCATATTTGTTACATCTTCTTACCAAT
EST: CTCTTCGTACGGTGGGAAACATTGTGACTGGTGACGATGTCCAAACGCAG TTCATCATAAACAATGGAGCGCTGCCATATTTGTTACATCTTCTCACCAATEST: gi|169067353|gb|FE473106.1|FE473106
genomic: CTCTTCGTACGGTGGGAAACATTGTGACTGGTGACGATGTCCAAACGCAGgtaaacttga ... ttatttccagTTTATCATAAACAATGGAGCGCTGCCATATTTGTTACATCTTCTTACCAAT
EST: CTCTTCGTACGGTGGGAAACATTGTGACTGGTGACGATGTCCAAACGCAG TTTATCATAAACAATGGAGCGCTGCCATATTTGTTACATCTTCTTACCAATEST: gi|169102471|gb|FE508021.1|FE508021
genomic: CTCTTCGTACGGTGGGAAACATTGTGACTGGTGACGATGTCCAAACGCAGgtaaacttga ... ttatttccagTTTATCATAAACAATGGAGCGCTGCCATATTTGTTACATCTTCTTACCAAT
EST: CTCTTCGTACGGTGGGAAACATTGTGACTGGTGACGATGTCCAAACGCAG TTCATCATAAACEST: gi|169049984|gb|FE458076.1|FE458076
genomic: CTCTTCGTACGGTGGGAAACATTGTGACTGGTGACGATGTCCAAACGCAGgtaaacttga ... ttatttccagTTTATCATAAAC
EST: CTCTTCGTACGGTGGGAAACATTGTGACTGGTGACGATGTCCAAACGCAG TTCATCATAAACAATGGAGCGCTGCCATATTTGTTACATCTTCTEST: gi|169020321|gb|FE428305.1|FE428305
genomic: CTCTTCGTACGGTGGGAAACATTGTGACTGGTGACGATGTCCAAACGCAGgtaaacttga ... ttatttccagTTTATCATAAACAATGGAGCGCTGCCATATTTGTTACATCTTCT
EST: CTCTTCGTACGGTGGGAAACATTGTGACTGGTGACGATGTCCAAACGCAG TTCATCATAAACAATGGAGCGCTGCCATATTTGTTACATCTTCTCACCAAT
genomic: CTCTTCGTACGGTGGGAAACATTGTGACTGGTGACGATGTCCAAACGCAGgtaaacttga ... ttatttccagTTTATCATAAACAATGGAGCGCTGCCATATTTGTTACATCTTCTTACCAAT
cttgaaacggaacatcctagatatttcttacgcctgtctttaaatttatttccagTTTATCATAAACAATGGAGCGCTGCCATATTTGTTACATCTTCTTACCAATGTTTACAAGAAGAGCATAAAAAAGGAGGCTTGCTGGACAATCTCGAACA
ttcttac putative branch site (score: 36)
tttatttcc putative PPT
tgtctttaaatttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaacttgaaacggaacatcctagatatttcttacgcctgtctttaaatttatttccagTTTATCATAAACAATGGAGCGCTGCCATATTTGTTACATCTTCTTACCAATGTTTACAAGAAGAGCATAAAAAAGGAGGCTTGCTGGACAATCTCGAACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA