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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggtgatttatcatccttctgttctccaagcttactttgtgtttaaagGTGTTGATGGACATGGGAGCTCCGTATAGTAACACTGTAGAGCTCGTGTCGTTTCATTCTGTATCCAAAGGCTTTTTAGGCGAGTGTGGACAACGTGGTG

Basic information

species Selaginella moellendorffii
transcript EFJ30498
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169106825|gb|FE508773.1|FE508773
EST:     ACCAAGTTAATGTTTACCAAGATGAGAGGCCTTTCGTGAGCGCAAAGAAG                         GTGTTGATGGACATGGGAGCTCCGTATAGTAACACTGTAGAGCTCGTGTCG
genomic: ACCAAGTTAATGTTTACCAAGATGAGAGGCCTTTCGTGAGCGCAAAGAAGgttggtgatt ... gtgtttaaagGTGTTGATGGACATGGGAGCTCCGTATAGTAACACTGTAGAGCTCGTGTCG
EST: gi|169046058|gb|FE453955.1|FE453955
EST:     ACCAAGTTAATGTTTACCAAGATGAGAGGCCTTTCGTGAGCGCAAAGAAG                         -TGTTGATGGACATGGGAG
genomic: ACCAAGTTAATGTTTACCAAGATGAGAGGCCTTTCGTGAGCGCAAAGAAGgttggtgatt ... gtgtttaaagGTGTTGATGGACATGGGAG
EST: gi|169058051|gb|FE463959.1|FE463959
EST:     ACCAAGTTAATGTTTACCAAGATGAGAGGCCTTTCGTGAGCGCAAAGAAG                         GTGTTGATGGACATGGGAGCTCCGTATAGTAACACTGTAGAGCTCGTGTCG
genomic: ACCAAGTTAATGTTTACCAAGATGAGAGGCCTTTCGTGAGCGCAAAGAAGgttggtgatt ... gtgtttaaagGTGTTGATGGACATGGGAGCTCCGTATAGTAACACTGTAGAGCTCGTGTCG
EST: gi|169065717|gb|FE476205.1|FE476205
EST:     ACCAAGTTAATGTTTACCAAGATGAGAGGCCTTTCGTGAGCGCAAAGAAG                         GTGTTGATGGACATGGGAGCTCCGTATAGTAACACTGTAGAGCTCGTGTCG
genomic: ACCAAGTTAATGTTTACCAAGATGAGAGGCCTTTCGTGAGCGCAAAGAAGgttggtgatt ... gtgtttaaagGTGTTGATGGACATGGGAGCTCCGTATAGTAACACTGTAGAGCTCGTGTCG
EST: gi|169059961|gb|FE467323.1|FE467323
EST:     ACCAAGTTAATGTTTACCAAGATGAGAGGCCTTTCGTGAGCGCAAAGAAG                         GTGTTGATGGACATGGGAGCTCCGTATAGTAACACTGTAGAGCTCGTGTCG
genomic: ACCAAGTTAATGTTTACCAAGATGAGAGGCCTTTCGTGAGCGCAAAGAAGgttggtgatt ... gtgtttaaagGTGTTGATGGACATGGGAGCTCCGTATAGTAACACTGTAGAGCTCGTGTCG
EST: gi|169112479|gb|FE512756.1|FE512756
EST:     CCAAGTTAATGTTTACC-AGNATGAGAGGCCTTTCGTGAGCGCAAAGAAG                         GTGTTGATGGACATGGGAGCTCCGTATAGTAACACTGTAGAGCTCGTGTCG
genomic: CCAAGTTAATGTTTACCAAG-ATGAGAGGCCTTTCGTGAGCGCAAAGAAGgttggtgatt ... gtgtttaaagGTGTTGATGGACATGGGAGCTCCGTATAGTAACACTGTAGAGCTCGTGTCG
EST: gi|169056996|gb|FE466223.1|FE466223
EST:     CCAAGTTAATG-TTACCCAAGATGAGAGGCCTTTCGTGAGCGCAAAGAAG                         GTGTTGATGGACATGGGAGCTCCGTATAGTAACACTGTAGAGCTCGTGTCG
genomic: CCAAGTTAATGTTTA-CCAAGATGAGAGGCCTTTCGTGAGCGCAAAGAAGgttggtgatt ... gtgtttaaagGTGTTGATGGACATGGGAGCTCCGTATAGTAACACTGTAGAGCTCGTGTCG
EST: gi|169042322|gb|FE452870.1|FE452870
EST:     AGCGCAAAGAAG                         GTGTTGATGGACATGGGAGCTCCGTATAGTAACACTGTAGAGCTCGTGTCG
genomic: AGCGCAAAGAAGgttggtgatt ... gtgtttaaagGTGTTGATGGACATGGGAGCTCCGTATAGTAACACTGTAGAGCTCGTGTCG
EST: gi|169036857|gb|FE444974.1|FE444974
EST:     AGATGAGAGGCCTTTCGTGAGCGCAAAGAAG                         GTGTTGATGGACATGGGAGCTCCGTATAGTAACACTGTAGAGCTCGTGTCG
genomic: AGATGAGAGGCCTTTCGTGAGCGCAAAGAAGgttggtgatt ... gtgtttaaagGTGTTGATGGACATGGGAGCTCCGTATAGTAACACTGTAGAGCTCGTGTCG
EST: gi|169056997|gb|FE466224.1|FE466224
EST:     ACCAAGTTAATGTTTACCAAGATGAGAGGCCTTTCGTGAGCGCANAGAAG                         GTGTTGATGGACATGGGAGCTCCGTATAGTAACACTGTAGAGCTCGTGTCG
genomic: ACCAAGTTAATGTTTACCAAGATGAGAGGCCTTTCGTGAGCGCAAAGAAGgttggtgatt ... gtgtttaaagGTGTTGATGGACATGGGAGCTCCGTATAGTAACACTGTAGAGCTCGTGTCG
EST: gi|169073090|gb|FE484143.1|FE484143
EST:     ACCAAGATGAGAGGCTTTTCGTGAGCGCAAAGAAG                         GTGTTGATGGACATGGGAGCTCCGTATAGTAACACTGTAGAGCTCGTGTCG
genomic: ACCAAGATGAGAGGCCTTTCGTGAGCGCAAAGAAGgttggtgatt ... gtgtttaaagGTGTTGATGGACATGGGAGCTCCGTATAGTAACACTGTAGAGCTCGTGTCG
EST: gi|169088622|gb|FE495980.1|FE495980
EST:     ACCAAGTTAATGTTTACCAAGATGAGAGGCCTTTCGTGAGCGCAAAGAAG                         GTGTTGATGGACATGGGAGCTCCGTATAGTAACACTGTAGAGCTCGTGTCG
genomic: ACCAAGTTAATGTTTACCAAGATGAGAGGCCTTTCGTGAGCGCAAAGAAGgttggtgatt ... gtgtttaaagGTGTTGATGGACATGGGAGCTCCGTATAGTAACACTGTAGAGCTCGTGTCG
EST: gi|169067159|gb|FE474927.1|FE474927
EST:     ACCAAGTTAATGTTTACCAAGATGAGAGGCCTTTCGTGAGCGCAAAGAAG                         GTGTTGATGGACATGGGAGCTCCGTATAGTAACACTGTAGAGCTCGTGTCG
genomic: ACCAAGTTAATGTTTACCAAGATGAGAGGCCTTTCGTGAGCGCAAAGAAGgttggtgatt ... gtgtttaaagGTGTTGATGGACATGGGAGCTCCGTATAGTAACACTGTAGAGCTCGTGTCG
EST: gi|169035665|gb|FE445435.1|FE445435
EST:     ACCAAGTTAATGTTTACCAAGATGAGAGGCCTTTCGTGAGCGCAAAGAAG                         GTGTTGATGGACATGGGAGCTCCGTATAGTAACACTGTAGAGCTCGTGTCG
genomic: ACCAAGTTAATGTTTACCAAGATGAGAGGCCTTTCGTGAGCGCAAAGAAGgttggtgatt ... gtgtttaaagGTGTTGATGGACATGGGAGCTCCGTATAGTAACACTGTAGAGCTCGTGTCG
EST: gi|169044151|gb|FE452153.1|FE452153
EST:     TGAGCGCAAAGAAG                         GTG-TGATGGGACATGGGAGCTCCGTATAGTAACACTGTAGAGCTCGTGTC
genomic: TGAGCGCAAAGAAGgttggtgatt ... gtgtttaaagGTGTTGAT-GGACATGGGAGCTCCGTATAGTAACACTGTAGAGCTCGTGTC
EST: gi|169029047|gb|FE437550.1|FE437550
EST:     CAAGATGAGAGGCCTTTCGTGAGCGCAAAGAAG                         GTGTTGATGGACATGGGAGCTCCGTATAGTAACACTGTAGAGCTCGTGTCG
genomic: CAAGATGAGAGGCCTTTCGTGAGCGCAAAGAAGgttggtgatt ... gtgtttaaagGTGTTGATGGACATGGGAGCTCCGTATAGTAACACTGTAGAGCTCGTGTCG
EST: gi|169078707|gb|FE486515.1|FE486515
EST:     CAAGATGAGAGGCCTTTCGTGAGCGCAAAGAAG                         GTGTTGAT-GACATGGGGAGCTCCGTATAGTAACACTGTAGAGCTCGTGTC
genomic: CAAGATGAGAGGCCTTTCGTGAGCGCAAAGAAGgttggtgatt ... gtgtttaaagGTGTTGATGGACAT-GGGAGCTCCGTATAGTAACACTGTAGAGCTCGTGTC
EST: gi|169059960|gb|FE467322.1|FE467322
EST:     ACCAAGTTAATGTTTACCAAGATGAGAGGCCTTTCGTGAGCGCAAAGAAG                         GTGTTGATGGACATGGGAGCTCCGTATAGTAACACTGTAGAGCTCGTGTCG
genomic: ACCAAGTTAATGTTTACCAAGATGAGAGGCCTTTCGTGAGCGCAAAGAAGgttggtgatt ... gtgtttaaagGTGTTGATGGACATGGGAGCTCCGTATAGTAACACTGTAGAGCTCGTGTCG
EST: gi|169078708|gb|FE486516.1|FE486516
EST:     ACCAAGTTAATGTTTACCAAGATGAGAGGCCTTTCGTGAGCGCAAAGAAG                         GTGTTGATGGACATGGGAGCTCCGTATAGTAACACTGTAGAGCTCGTGTCG
genomic: ACCAAGTTAATGTTTACCAAGATGAGAGGCCTTTCGTGAGCGCAAAGAAGgttggtgatt ... gtgtttaaagGTGTTGATGGACATGGGAGCTCCGTATAGTAACACTGTAGAGCTCGTGTCG
EST: gi|169020173|gb|FE428235.1|FE428235
EST:     GATGAGAGGCCTTTCGTGAGCGCAAAGAAG                         GTGTTGATGGACATGGGAGCTCCGTATAGTAACACTGTAGAGCTCGTGTCG
genomic: GATGAGAGGCCTTTCGTGAGCGCAAAGAAGgttggtgatt ... gtgtttaaagGTGTTGATGGACATGGGAGCTCCGTATAGTAACACTGTAGAGCTCGTGTCG
EST: gi|169106600|gb|FE504635.1|FE504635
EST:     AGCGCAAAGAAG                         GTGTTGATGGACATGGGAGCTCCGTATAGTAACACTGTAGAGCTCGTGTCG
genomic: AGCGCAAAGAAGgttggtgatt ... gtgtttaaagGTGTTGATGGACATGGGAGCTCCGTATAGTAACACTGTAGAGCTCGTGTCG
EST: gi|169067160|gb|FE474928.1|FE474928
EST:     ACCAAGTTAATGTTTACCAAGATGAGAGGCCTTTCGTGAGCGCAAAGAAG                         GTGTTGATGGACATGGGAGCTCCGTATAGTAACACTGTAGAGCTCGTGTCG
genomic: ACCAAGTTAATGTTTACCAAGATGAGAGGCCTTTCGTGAGCGCAAAGAAGgttggtgatt ... gtgtttaaagGTGTTGATGGACATGGGAGCTCCGTATAGTAACACTGTAGAGCTCGTGTCG
EST: gi|169066245|gb|FE475199.1|FE475199
EST:     ACCAAGTTAATGTTTACCAAGATGAGAGGCCTTTCGTGAGCGCAAAGAAG                         GTGTTGATGGACATGGGAGCTCCGTATAGTAACACTGTAGAGCTCGTGTCG
genomic: ACCAAGTTAATGTTTACCAAGATGAGAGGCCTTTCGTGAGCGCAAAGAAGgttggtgatt ... gtgtttaaagGTGTTGATGGACATGGGAGCTCCGTATAGTAACACTGTAGAGCTCGTGTCG
EST: gi|169045644|gb|FE452605.1|FE452605
EST:     ACCAAGTTAATGTTTACCAAGATGAGAGGCCTTTCGTGAGCGCAAAGAAG                         GTGTTGATGGACATGGGAGCTCCGTATAGTAACACTGTAGAGCTCGTGTCG
genomic: ACCAAGTTAATGTTTACCAAGATGAGAGGCCTTTCGTGAGCGCAAAGAAGgttggtgatt ... gtgtttaaagGTGTTGATGGACATGGGAGCTCCGTATAGTAACACTGTAGAGCTCGTGTCG
EST: gi|169106824|gb|FE508772.1|FE508772
EST:     ACCAAGTTAATGTTTACCAAGATGAGAGGCCTTTCGTGAGCGCAAAGAAG                         GTGTTGATGGACATGGGAGCTCCGTATAGTAACACTGTAGAGCTCGTGTCG
genomic: ACCAAGTTAATGTTTACCAAGATGAGAGGCCTTTCGTGAGCGCAAAGAAGgttggtgatt ... gtgtttaaagGTGTTGATGGACATGGGAGCTCCGTATAGTAACACTGTAGAGCTCGTGTCG
EST: gi|169111757|gb|FE511956.1|FE511956
EST:     ACCAAGTTAATGTTTACCAAGATGAGAGGCCTTTCGTGAGCGCAAAGAAG                         GTGTTGATGGACATGGGAGCTCCGTATAGTAACACTGTAGAGCTCGTGTCG
genomic: ACCAAGTTAATGTTTACCAAGATGAGAGGCCTTTCGTGAGCGCAAAGAAGgttggtgatt ... gtgtttaaagGTGTTGATGGACATGGGAGCTCCGTATAGTAACACTGTAGAGCTCGTGTCG
EST: gi|169054114|gb|FE462349.1|FE462349
EST:     ACCAAGTTAATGTTTACCAAGATGAGAGGCCTTTCGTGAGCGCAAAGAAG                         GTGTTGATGGACATGGGAGCTCCGTATAGTAACACTGTAGAGCTCGTGTCG
genomic: ACCAAGTTAATGTTTACCAAGATGAGAGGCCTTTCGTGAGCGCAAAGAAGgttggtgatt ... gtgtttaaagGTGTTGATGGACATGGGAGCTCCGTATAGTAACACTGTAGAGCTCGTGTCG
EST: gi|169106601|gb|FE504636.1|FE504636
EST:     ACCAAGTTAATGTTTACCAAGATGAGAGGCCTTTCGTGAGCGCAAAGAAG                         GTGTTGATGGACATGGGAGCTCCGTATAGTAACACTGTAGAGCTCGTGTCG
genomic: ACCAAGTTAATGTTTACCAAGATGAGAGGCCTTTCGTGAGCGCAAAGAAGgttggtgatt ... gtgtttaaagGTGTTGATGGACATGGGAGCTCCGTATAGTAACACTGTAGAGCTCGTGTCG
EST: gi|169044380|gb|FE453318.1|FE453318
EST:     GTGAGCGCAAAGAAG                         GTGTTGATGGACATGGGAGCTCCTTATAGTAACACTGTAGAGCTCGTGTCG
genomic: GTGAGCGCAAAGAAGgttggtgatt ... gtgtttaaagGTGTTGATGGACATGGGAGCTCCGTATAGTAACACTGTAGAGCTCGTGTCG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 34 (upstream exon), 34 (downstream exon)
Score: 63

TATTAAGTTTTGCTACAAGGAGAGGCTTCTCCTCATGGCGGACGAAGTTTACCAAGTTAATGTTTACCAAGATGAGAGGCCTTTCGTGAGCGCAAAGAAGgttggtgatt ... gtgtttaaagGTGTTGATGGACATGGGAGCTCCGTATAGTAACACTGTAGAGCTCGTGTCGTTTCATTCTGTATCCAAAGGCTTTTTAGGCGAGTGTGGACAACGTGGTG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttggtgatttatcatccttctgttctccaagcttactttgtgtttaaagGTGTTGATGGACATGGGAGCTCCGTATAGTAACACTGTAGAGCTCGTGTCGTTTCATTCTGTATCCAAAGGCTTTTTAGGCGAGTGTGGACAACGTGGTG
                                   agcttac  putative branch site (score: 63)
                 atttatcat  TA-rich tract