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gtgagaaattaagtatttgcaaggaattgtcttttacactgtctccagGTGGAACCACCCGATCGGCAAGGAAGGGAAGAGATTTTAAACGTGCACGTCACAAAGAAGGGCTTGCCTCTTTCGAAGGACGTCAACCTGAATGCTGTTG
species | Selaginella moellendorffii |
transcript | EFJ30338 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTCTAGACCCCGCCCTGAGGCGACCCGGACGATTTGATCGGATTGTTATG GTGGAACCACCCGATCGGCAAGGAAGGGAAGAGATTTTAAACGTGCACGTCEST: gi|169051491|gb|FE459726.1|FE459726
genomic: TTCTAGACCCCGCCCTGAGGCGACCCGGACGATTTGATCGGATTGTTATGgtgagaaatt ... ctgtctccagGTGGAACCACCCGATCGGCAAGGAAGGGAAGAGATTTTAAACGTGCACGTC
EST: TTCTAGACCCCGCCCTGAGGCGACCCGGACGATTTGATCGGATTGTTATG GTGGAACCACCCGATCGGCAAGGAAGGGAAGAGATTTTAAACGTGCACGTCEST: gi|169063428|gb|FE471430.1|FE471430
genomic: TTCTAGACCCCGCCCTGAGGCGACCCGGACGATTTGATCGGATTGTTATGgtgagaaatt ... ctgtctccagGTGGAACCACCCGATCGGCAAGGAAGGGAAGAGATTTTAAACGTGCACGTC
EST: TTCTAGACCCCGCCCTGAGGCGACCCGGACGATTTGATCGGATTGTTATG GTGGAACCACCCGATCGGCAAGGAAGGGAAGAGATTTTAAACGTGCACGTCEST: gi|169064597|gb|FE471328.1|FE471328
genomic: TTCTAGACCCCGCCCTGAGGCGACCCGGACGATTTGATCGGATTGTTATGgtgagaaatt ... ctgtctccagGTGGAACCACCCGATCGGCAAGGAAGGGAAGAGATTTTAAACGTGCACGTC
EST: CTAGACCCCGCCCTGAGGCGACCCCGACGATTTGATNNCG-ATTGT-ATG GTGGAACCACCCGATCGGCAGGGA-GGGAEST: gi|169047420|gb|FE455629.1|FE455629
genomic: CTAGACCCCGCCCTGAGGCGACCCGGACGATTTGAT--CGGATTGTTATGgtgagaaatt ... ctgtctccagGTGGAACCACCCGATCGGCAAGGAAGGGA
EST: TTCTAGACCCCGCCCTGAGGCGACCCGGACGATTTGATCGGATTGTTATG GTGGAACCACCCGATCGGCAAGGAAGGGAAGAGATTTTAAACGTGCACGTTEST: gi|169064596|gb|FE471327.1|FE471327
genomic: TTCTAGACCCCGCCCTGAGGCGACCCGGACGATTTGATCGGATTGTTATGgtgagaaatt ... ctgtctccagGTGGAACCACCCGATCGGCAAGGAAGGGAAGAGATTTTAAACGTGCACGTC
EST: TTCTAGACCCCGCCCTGAGGCGACCCGGACGATTTGATCGGATTGTTATG GTGGAACCACCCGATCGGCAAGGAAGGGAAGAGATTTTAAACGTGCACGTC
genomic: TTCTAGACCCCGCCCTGAGGCGACCCGGACGATTTGATCGGATTGTTATGgtgagaaatt ... ctgtctccagGTGGAACCACCCGATCGGCAAGGAAGGGAAGAGATTTTAAACGTGCACGTC
gtgagaaattaagtatttgcaaggaattgtcttttacactgtctccagGTGGAACCACCCGATCGGCAAGGAAGGGAAGAGATTTTAAACGTGCACGTCACAAAGAAGGGCTTGCCTCTTTCGAAGGACGTCAACCTGAATGCTGTTG
ctgtctcc CT-rich tract
agaaattaagtattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagaaattaagtatttgcaaggaattgtcttttacactgtctccagGTGGAACCACCCGATCGGCAAGGAAGGGAAGAGATTTTAAACGTGCACGTCACAAAGAAGGGCTTGCCTCTTTCGAAGGACGTCAACCTGAATGCTGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT