1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaaaatatttaatattttacgattgaagtcgctatcttaagaaaactgtggttccccggtgcagGGATTTGGTTCCTTCTTGTTGCGAGACCTGCCTTTCGACGCGATCCAGTTTTGCATTTACGAGCAACTTAAGATCGGCTACAAAAAGATG
species | Selaginella moellendorffii |
transcript | EFJ30292 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TAGCTGTCCGGAGTATTGTGAGCAACGAAGGTTTCCGGGGCCTCTATGCG GGATTTGGTTCCTTCTTGTTGCGAGACCTGCCTTTCGACGCGATCCAGTTTEST: gi|169039479|gb|FE447295.1|FE447295
genomic: TAGCTGTCCGGAGTATTGTGAGCAACGAAGGTTTCCGGGGCCTCTATGCGgtaaaatatt ... cccggtgcagGGATTTGGTTCCTTCTTGTTGCGAGACCTGCCTTTCGACGCGATCCAGTTT
EST: TAGCTGTCCGGAGTATTGTGAGCAACGAAGGTTTCCGGGGCCTCTATGCG GGATTTGGTTCCTTCTTGTTGCGAGACCTGCCTTTCGACGCGATCCAGTTTEST: gi|169039478|gb|FE447294.1|FE447294
genomic: TAGCTGTCCGGAGTATTGTGAGCAACGAAGGTTTCCGGGGCCTCTATGCGgtaaaatatt ... cccggtgcagGGATTTGGTTCCTTCTTGTTGCGAGACCTGCCTTTCGACGCGATCCAGTTT
EST: TAGCTGTCCGGAGTATTGTGAGCAACGAAGGTTTCCGGGGCCTCTATGCG GGATTTGGTTCCTTCTTGTTGCGAGACCTGCCTTTCGACGCGATCCAGTTTEST: gi|169053904|gb|FE460995.1|FE460995
genomic: TAGCTGTCCGGAGTATTGTGAGCAACGAAGGTTTCCGGGGCCTCTATGCGgtaaaatatt ... cccggtgcagGGATTTGGTTCCTTCTTGTTGCGAGACCTGCCTTTCGACGCGATCCAGTTT
EST: TAGCTGTCCGGAGTATTGTGAGCAACGAAGGTTTCCGGGGCCTCTATGCG GGATTTGGTTCCTTCTTGTTGCGAGACCTGCCTTTCGACGCGATCCAGTTT
genomic: TAGCTGTCCGGAGTATTGTGAGCAACGAAGGTTTCCGGGGCCTCTATGCGgtaaaatatt ... cccggtgcagGGATTTGGTTCCTTCTTGTTGCGAGACCTGCCTTTCGACGCGATCCAGTTT
taatattttacgattgaagtcgctatcttaagaaaactgtggttccccggtgcagGGATTTGGTTCCTTCTTGTTGCGAGACCTGCCTTTCGACGCGATCCAGTTTTGCATTTACGAGCAACTTAAGATCGGCTACAAAAAGATG
atttaat putative branch site (score: 5)
ttcccc putative PPT
ttaagaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaatatttaatattttacgattgaagtcgctatcttaagaaaactgtggttccccggtgcagGGATTTGGTTCCTTCTTGTTGCGAGACCTGCCTTTCGACGCGATCCAGTTTTGCATTTACGAGCAACTTAAGATCGGCTACAAAAAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG