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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttttttgttgttcctttctactttctcttttggctgaacttttggagtttttgcagCTTTATTTGTTGCAGAAGCTATCTGTGGAACCCTTATCTGCTTCTGAATACACACGTCTGACTTCG

Basic information

species Selaginella moellendorffii
transcript EFJ29384
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169018452|gb|FE427261.1|FE427261
EST:     ATTGGCGGAAACGAGTACTTCCTCTGCCATCATACATACCGTTTGGGCAG                         CTTTATTTGTTGCAGAAGCTATCTGTGGAACCCTTATCTGCTTCTGAATAC
genomic: ATTGGCGGAAACGAGTACTTCCTCTGCCATCATACATACCGTTTGGGCAGgtttttttgt ... gtttttgcagCTTTATTTGTTGCAGAAGCTATCTGTGGAACCCTTATCTGCTTCTGAATAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttgttgttcctttctactttctcttttggctgaacttttggagtttttgcagCTTTATTTGTTGCAGAAGCTATCTGTGGAACCCTTATCTGCTTCTGAATACACACGTCTGACTTCG
                                              tttttgc  CT-rich tract
                                   aactttt  TA-rich tract