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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctccatttttgtcttttgttttgttttggtatttgcgctaacaatcggtgcagTGCGTAGAAGTTGTCTCGCCTCAAGACAAAGCGCGAAAGCTGGAGCTGATTCTTCGGACTCAAGAGCCTGGGTCCAAGATTATCATATTCTGCTCAACAA

Basic information

species Selaginella moellendorffii
transcript EFJ28593
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ28593 (Selaginella moellendorffii), 3'ss of exon 7
lower sequence: PP1S138_142V6.1 (Physcomitrella patens), 3'ss of exon 6
--------------------------------------------------------------------------------gtctccatttttgtcttttgttttgttttggta------tttgcgctaacaatcggt-gcagTGCGTAGAAGTTGTCTCGCCTCAAGACAAAGCGCGAAAGCTGGAGCTGATTCTTCGGACTCAAGAGCCTGGGTCCAAGATTATCATATTCTGCTCAACAA
                                                                                   ||||  | ||||| || ||||  ||   ||      ||||    |    | | | ||||   || || || ||   |||  | || |||  | |    || |||| |||||| ||  | ||||||||||| ||||||||||||||||| || || || |
gttcgaatttgagtttctgcactcagactctttgttgtgttcggtgtgagatatatcgattcagtttcaaacttactttctggtccacctctgtctattcttttccttgactaaagctctttgtctgattttttgtttgcagAATGTGGAGGTAGTTGTGCCCTACGAGAAACAGAGGCGACTAGAGCAGATTCTACGATCACAAGAGCCTGGTTCCAAGATTATCATATTTTGTTCCACCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169033288|gb|FE441602.1|FE441602
EST:     TGAACATTGGAAATACAGACGATCTAGCTGCAAACAAGGCTATCACTCAG                         TGCGTAGAAGTTGTCTCGCCTCAAGACAAAGCGCGAAAGCTGGAGCTGATT
genomic: TGAACATTGGAAATACAGACGATCTAGCTGCAAACAAGGCTATCACTCAGgtctccattt ... atcggtgcagTGCGTAGAAGTTGTCTCGCCTCAAGACAAAGCGCGAAAGCTGGAGCTGATT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtctccatttttgtcttttgttttgttttggtatttgcgctaacaatcggtgcagTGCGTAGAAGTTGTCTCGCCTCAAGACAAAGCGCGAAAGCTGGAGCTGATTCTTCGGACTCAAGAGCCTGGGTCCAAGATTATCATATTCTGCTCAACAA
                                     cgctaac  putative branch site (score: 2)
               ttttgttttgtttt  TA-rich tract