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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagagcatatttttctgtttcttgttttgtgagaccgtccctgtatcagGTGGAATGGGATGAGATCAATGCCGCCTGGGGACAGGCGTGTCTATTGTTGCACACTATGGCACAATATTGCCAACTCAATTTTAC

Basic information

species Selaginella moellendorffii
transcript EFJ28277
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ28277 (Selaginella moellendorffii), 3'ss of exon 7
lower sequence: PP1S257_71V6.1 (Physcomitrella patens), 3'ss of exon 8
------------------------------------------------------------------------gtaagagcatatttttctgtttcttgttttgtgagaccgtcc-----ctgtatcagGTGGAATGGGATGAGATCAATGCCGCCTGGGGACAGGCGTGTCTATTGTTGCACACTATGGCACAATATTGCCAACTCAATTTTAC
                                                                        ||    ||| |||    | ||| |    | || |||   ||      ||    |||||||||||||||||||||||||| || ||||| ||||||||  || | ||||| || ||||| ||||  |||   ||||||||  |
gtaagtactttcctgcgtgatagacttgcagaatatatgtcgattgtatataagtattgttcattatatgacgtccttgca-attccattttttttgaggtagtaagattatctgtagtcttctacagGTGGAATGGGATGAGATCAATGCAGCGTGGGGTCAGGCGTGCTTACTTTTGCATACGATGGCTCAATTCTGCTGCCTCAATTTCTC

upper sequence: EFJ28277 (Selaginella moellendorffii), 3'ss of exon 7
lower sequence: PP1S51_193V6.1 (Physcomitrella patens), 3'ss of exon 7
-----------------------------------------------------------------------------------------------------gtaaga-----gcatatttttctgttt--cttgttttgtgagaccgtcc--ctgtatcagGTGGAATGGGATGAGATCAATGCCGCCTGGGGACAGGCGTGTCTATTGTTGCACACTATGGCACAATATTGCCAACTCAATTTTAC
                                                                                                     |||  |     |   |||||   | ||  ||   | | | |    || |        ||||||||||||||||| || ||||| |||||||| ||||| ||  |  | ||||| || ||||||||||| || |  || | ||| ||
gtaagttctctgcttcctgatatagctggatcacatgtattagattgctctaaaaactgaatgtgtacaattaaatgttgattgtaagttcatttcatgatgtagaaatcccgttcattttgacgcttatctacatctataaagttgtacaatctccgcagGTGGAATGGGATGAAATTAATGCAGCCTGGGGTCAGGCTTGCTTGCTTTTGCATACGATGGCACAATACTGTCGTCTAATTTTCAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaagagcatatttttctgtttcttgttttgtgagaccgtccctgtatcagGTGGAATGGGATGAGATCAATGCCGCCTGGGGACAGGCGTGTCTATTGTTGCACACTATGGCACAATATTGCCAACTCAATTTTAC
                                           ccgtccct  CT-rich tract
            atatttttctgttt  TA-rich tract