1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtatgctatatctctttcagatcaggtgcttgaatgtcatcgtttgtatatgcagGCTACGACGCTTTAGATAACCCCCTTTTGTCCTCGAGCTCCAGGCCTAGGTATAATAGCGCTAGTTCGTCTGCAGCGACCGGTTTACCTTCTCGACCCCT
species | Selaginella moellendorffii |
transcript | EFJ27860 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AACCATATCGCAATACTTGACGAGAATGGAACAAGCTTTTGCTGAATATG GCTACGACGCTTTAGATAACCCCCTTTTGTCCTCGAGCTCCAGGCCTAGGTEST: gi|169052008|gb|FE460347.1|FE460347
genomic: AACCATATCGCAATACTTGACGAGAATGGAACAAGCTTTTGCTGAATATGgtatgctata ... gtatatgcagGCTACGACGCTTTAGATAACCCCCTTTTGTCCTCGAGCTCCAGGCCTAGGT
EST: AACCATATCGCAATACTTGACGAGAATGGAACAAGCTTTTGCTGAATATG GCTACGACGCTTTAGATAACCCCCTTTTGTCCTCGAGCTCCAGGCCTAGGTEST: gi|169026937|gb|FE434262.1|FE434262
genomic: AACCATATCGCAATACTTGACGAGAATGGAACAAGCTTTTGCTGAATATGgtatgctata ... gtatatgcagGCTACGACGCTTTAGATAACCCCCTTTTGTCCTCGAGCTCCAGGCCTAGGT
EST: AACCATATCGCAATACTTGACGAGAATGGAACAAGCTTTTGCTGAATATG GCTACGACGCTTTAGATAACCCCCTTTTGTCCTCGAGCTCCAGGCCTAGGTEST: gi|169111628|gb|FE511892.1|FE511892
genomic: AACCATATCGCAATACTTGACGAGAATGGAACAAGCTTTTGCTGAATATGgtatgctata ... gtatatgcagGCTACGACGCTTTAGATAACCCCCTTTTGTCCTCGAGCTCCAGGCCTAGGT
EST: AACCATATCGCAATACTTGACGAGAATGGAACAAGCTTTTGCTGAATATG GCTACGACGCTTTAGATAACCCCCTTTTGTCCTCGAGCTCCAGGCCTAGGTEST: gi|169111797|gb|FE511177.1|FE511177
genomic: AACCATATCGCAATACTTGACGAGAATGGAACAAGCTTTTGCTGAATATGgtatgctata ... gtatatgcagGCTACGACGCTTTAGATAACCCCCTTTTGTCCTCGAGCTCCAGGCCTAGGT
EST: AACCATATCGCAATACTTGACGAGAATGGAACAAGCTTTTGCTGAATATG GCTACGACGCTTTAGATAACCCCCTTTTGTCCTCGAGCTCCAGGCCTAGGT
genomic: AACCATATCGCAATACTTGACGAGAATGGAACAAGCTTTTGCTGAATATGgtatgctata ... gtatatgcagGCTACGACGCTTTAGATAACCCCCTTTTGTCCTCGAGCTCCAGGCCTAGGT
gtatgctatatctctttcagatcaggtgcttgaatgtcatcgtttgtatatgcagGCTACGACGCTTTAGATAACCCCCTTTTGTCCTCGAGCTCCAGGCCTAGGTATAATAGCGCTAGTTCGTCTGCAGCGACCGGTTTACCTTCTCGACCCCT
tttgtatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgctatatctctttcagatcaggtgcttgaatgtcatcgtttgtatatgcagGCTACGACGCTTTAGATAACCCCCTTTTGTCCTCGAGCTCCAGGCCTAGGTATAATAGCGCTAGTTCGTCTGCAGCGACCGGTTTACCTTCTCGACCCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG