1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gttgtatcgaaatctctctctgaactttgtctcactctcgggtgcgcattttacagCTCGTGAACTGGTCGTCTGGAGGATACTTGGTGACTGATAAACCCATGCCTAGAGGAGAAATTGTCATTGGCGGCCCCAGTGTTACATTGGGATACTTCA
species | Selaginella moellendorffii |
transcript | EFJ27012 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TCCCACATTGCTATATCAAG CTCGTGAACTGGTCGTCTGGAGGATACTTGGTGACTGATAAACCCATGCCTEST: gi|169020952|gb|FE429339.1|FE429339
genomic: TCCCACATTGCTATATCAAGgttgtatcga ... cattttacagCTCGTGAACTGGTCGTCTGGAGGATACTTGGTGACTGATAAACCCATGCCT
EST: ATATTAGCGTTGGCCGTGTCGGCCCACCAGTCCCACATTGCTATATCAAG CTCGTGAACTGGTCGTCTGGAGGATACTTGGTGACTGATAAACCCATGCCTEST: gi|169114439|gb|FE516312.1|FE516312
genomic: ATATTAGCGTTGGCCGTGTCGGCCCACCAGTCCCACATTGCTATATCAAGgttgtatcga ... cattttacagCTCGTGAACTGGTCGTCTGGAGGATACTTGGTGACTGATAAACCCATGCCT
EST: ATATTAGCGTTGGCCGTGTCGGCCCACCAGTCCCACATTGCTATATCAAG CTCGTGAACTGGTCGTCTGGAGGATACTTGGTGACTGATAAACCCATGCCTEST: gi|169092854|gb|FE494979.1|FE494979
genomic: ATATTAGCGTTGGCCGTGTCGGCCCACCAGTCCCACATTGCTATATCAAGgttgtatcga ... cattttacagCTCGTGAACTGGTCGTCTGGAGGATACTTGGTGACTGATAAACCCATGCCT
EST: ATATTAGCGTTGGCCGTGTCGGCCCACCAGTCCCACATTGCTATATCAAG CTCGTGAACTGGTCGTCTGGAGGATACTTGGTGACTGATAAACCCATGCCTEST: gi|169114438|gb|FE516311.1|FE516311
genomic: ATATTAGCGTTGGCCGTGTCGGCCCACCAGTCCCACATTGCTATATCAAGgttgtatcga ... cattttacagCTCGTGAACTGGTCGTCTGGAGGATACTTGGTGACTGATAAACCCATGCCT
EST: ATATTAGCGTTGGCCGTGTCGGCCCACCAGTCCCACATTGCTATATCAAG CTCGTGAACTGGTCGTCTGGAGGATACTTGGTGACTGATAAACCCATGCCTEST: gi|169020906|gb|FE431984.1|FE431984
genomic: ATATTAGCGTTGGCCGTGTCGGCCCACCAGTCCCACATTGCTATATCAAGgttgtatcga ... cattttacagCTCGTGAACTGGTCGTCTGGAGGATACTTGGTGACTGATAAACCCATGCCT
EST: ATATTAGCGTTGGCCGTGTCGGCCCACCAGTCCCACATTGCTATATCAAG CTCGTGAACTGGTCGTCTGGAGGATACTTGGTGACTGATAAACCCATGCCTEST: gi|169068347|gb|FE479171.1|FE479171
genomic: ATATTAGCGTTGGCCGTGTCGGCCCACCAGTCCCACATTGCTATATCAAGgttgtatcga ... cattttacagCTCGTGAACTGGTCGTCTGGAGGATACTTGGTGACTGATAAACCCATGCCT
EST: ATATTAGCGTTGGCCGTGTCGGCCCACCAGTCCCACATTGCTATATCAAG CTCGTGAACTGGTCGTCTGGAGGATACTTGGTGACTGATAAACCCATGCCTEST: gi|169071984|gb|FE478193.1|FE478193
genomic: ATATTAGCGTTGGCCGTGTCGGCCCACCAGTCCCACATTGCTATATCAAGgttgtatcga ... cattttacagCTCGTGAACTGGTCGTCTGGAGGATACTTGGTGACTGATAAACCCATGCCT
EST: ATATTAGCGTTGGCCGTGTCGGCCCACCAGTCCCACATTGCTATATCAAG CTCGTGAACTGGTCGTCTGGAGGATACTTGGTGACTGATAAACCCATGCCTEST: gi|169092855|gb|FE494980.1|FE494980
genomic: ATATTAGCGTTGGCCGTGTCGGCCCACCAGTCCCACATTGCTATATCAAGgttgtatcga ... cattttacagCTCGTGAACTGGTCGTCTGGAGGATACTTGGTGACTGATAAACCCATGCCT
EST: ATATTAGCGTTGGCCGTGTCGGCCCACCAGTCCCACATTGCTATATCAAG CTCGTGAACTGGTCGTCTGGAGGATACTTGGTGACTGATAAACCCATGCCTEST: gi|169071983|gb|FE478192.1|FE478192
genomic: ATATTAGCGTTGGCCGTGTCGGCCCACCAGTCCCACATTGCTATATCAAGgttgtatcga ... cattttacagCTCGTGAACTGGTCGTCTGGAGGATACTTGGTGACTGATAAACCCATGCCT
EST: ATATTAGCGTTGGCCGTGTCGGCCCACCAGTCCCACATTGCTATATCAAG CTCGTGAACTGGTCGTCTGGAGGATACTTGGTGACTGATAAACCCATGCCT
genomic: ATATTAGCGTTGGCCGTGTCGGCCCACCAGTCCCACATTGCTATATCAAGgttgtatcga ... cattttacagCTCGTGAACTGGTCGTCTGGAGGATACTTGGTGACTGATAAACCCATGCCT
ttgtatcgaaatctctctctgaactttgtctcactctcgggtgcgcattttacagCTCGTGAACTGGTCGTCTGGAGGATACTTGGTGACTGATAAACCCATGCCTAGAGGAGAAATTGTCATTGGCGGCCCCAGTGTTACATTGGGATACTTCA
gtctcac putative branch site (score: 12)
attttaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgtatcgaaatctctctctgaactttgtctcactctcgggtgcgcattttacagCTCGTGAACTGGTCGTCTGGAGGATACTTGGTGACTGATAAACCCATGCCTAGAGGAGAAATTGTCATTGGCGGCCCCAGTGTTACATTGGGATACTTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA