1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gttgtatcgaaatctctctctgaactttgtctcactctcgggtgcgcattttacagCTCGTGAACTGGTCGTCTGGAGGATACTTGGTGACTGATAAACCCATGCCTAGAGGAGAAATTGTCATTGGCGGCCCCAGTGTTACATTGGGATACTTCA
species | Selaginella moellendorffii |
transcript | EFJ26722 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ATATTAGCGTTGGCCGTGTCGGCCCACCAGTCCCACATTGCTATATCAAG CTCGTGAACTGGTCGTCTGGAGGATACTTGGTGACTGATAAACCCATGCCTEST: gi|169102589|gb|FE508568.1|FE508568
genomic: ATATTAGCGTTGGCCGTGTCGGCCCACCAGTCCCACATTGCTATATCAAGgttgtatcga ... cattttacagCTCGTGAACTGGTCGTCTGGAGGATACTTGGTGACTGATAAACCCATGCCT
EST: ATATTAGCGTGGGCCGTGTCGGCCCACCAGTCCCACATTGCTATATCAAG CTCGTGAACTGGTCGTCTGGAGGATACTTGGTGACTGATAAACCCATGCCTEST: gi|169020953|gb|FE429340.1|FE429340
genomic: ATATTAGCGTTGGCCGTGTCGGCCCACCAGTCCCACATTGCTATATCAAGgttgtatcga ... cattttacagCTCGTGAACTGGTCGTCTGGAGGATACTTGGTGACTGATAAACCCATGCCT
EST: ATATTAGCGTTGGCCGTGTCGGCCCACCAGTCCCACATTGCTATATCAAG CTCGTGAACTGGTCGTCTGGAGGATACTTGGTGACTGATAAACCCATGCCTEST: gi|169088887|gb|FE492865.1|FE492865
genomic: ATATTAGCGTTGGCCGTGTCGGCCCACCAGTCCCACATTGCTATATCAAGgttgtatcga ... cattttacagCTCGTGAACTGGTCGTCTGGAGGATACTTGGTGACTGATAAACCCATGCCT
EST: ATATTAGCGTTGGCCGTGTCGGCCCACCAGTCCCACATTGCTATATCAAGG TEST: gi|169088887|gb|FE492865.1|FE492865
genomic: ATATTAGCGTTGGCCGTGTCGGCCCACCAGTCCCACATTGCTATATCAA-Ggttgtatcga ... cattttacag-
EST: ATATTAGCGTTGGCCGTGTCGGCCCACCAGTCCCACATTGCTATATCAAGG TEST: gi|169088887|gb|FE492865.1|FE492865
genomic: ATATTAGCGTTGGCCGTGTCGGCCCACCAGTCCCACATTGCTATATCAA-Ggttgtatcga ... cattttacag-
EST: ATATTAGCGTTGGCCGTGTCGGCCCACCAGTCCCACATTGCTATATCAAGG TEST: gi|169098740|gb|FE500252.1|FE500252
genomic: ATATTAGCGTTGGCCGTGTCGGCCCACCAGTCCCACATTGCTATATCAA-Ggttgtatcga ... cattttacag-
EST: ATATTAGCGTTGGCCGTGTCGGCCCACCAGTCCCACATTGCTATATCAAG CTCGTGAACTGGTCGTCTGGAGGATACTTGGTGACTGATAAACCCATGCCTEST: gi|169054875|gb|FE463479.1|FE463479
genomic: ATATTAGCGTTGGCCGTGTCGGCCCACCAGTCCCACATTGCTATATCAAGgttgtatcga ... cattttacagCTCGTGAACTGGTCGTCTGGAGGATACTTGGTGACTGATAAACCCATGCCT
EST: ATATTAGCGTTGGCCGTGTCGGCCCACCAGTCCCACATTGCTATATCAAG CTCGTGAACTGGTCGTCTGGAGGATACTTGGTGACTGATAAACCCATGCCTEST: gi|169113591|gb|FE514502.1|FE514502
genomic: ATATTAGCGTTGGCCGTGTCGGCCCACCAGTCCCACATTGCTATATCAAGgttgtatcga ... cattttacagCTCGTGAACTGGTCGTCTGGAGGATACTTGGTGACTGATAAACCCATGCCT
EST: ATATTAGCGTTGGCCGTGTCGGCCCACCAGTCCCACATTGCTATATCAAG CTCGTGAACTGGTCGTCTGGAGGATACTTGGTGACTGATAAACCCATGCCT
genomic: ATATTAGCGTTGGCCGTGTCGGCCCACCAGTCCCACATTGCTATATCAAGgttgtatcga ... cattttacagCTCGTGAACTGGTCGTCTGGAGGATACTTGGTGACTGATAAACCCATGCCT
ttgtatcgaaatctctctctgaactttgtctcactctcgggtgcgcattttacagCTCGTGAACTGGTCGTCTGGAGGATACTTGGTGACTGATAAACCCATGCCTAGAGGAGAAATTGTCATTGGCGGCCCCAGTGTTACATTGGGATACTTCA
gtctcac putative branch site (score: 12)
attttaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgtatcgaaatctctctctgaactttgtctcactctcgggtgcgcattttacagCTCGTGAACTGGTCGTCTGGAGGATACTTGGTGACTGATAAACCCATGCCTAGAGGAGAAATTGTCATTGGCGGCCCCAGTGTTACATTGGGATACTTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA