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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtagcttctcttccttctttatatctcacacattctcttttacgtttgtgttctaccagGGCCGTCACCTCCGCGGGATCCTCGGAGCTCGTAGCAGTGTCGTCGCTGTGCACGTATGACATCTACCGGACATACATCAACCCCAAGGCGACCGGGAAG

Basic information

species Selaginella moellendorffii
transcript EFJ26403
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ26403 (Selaginella moellendorffii), 3'ss of exon 7
lower sequence: PP1S257_108V6.1 (Physcomitrella patens), 3'ss of exon 5
--------------------------gtacgtagcttctcttcctt--ctttatatctcacacattct--cttttacgtttgtgttc-tac---cagGGCCGTCACCTCCGCGGGATCCTCGGAGCTCGTAGCAGTGTCGTCGCTGTGCACGTATGACATCTACCGGACATACATCAACCCCAAGGCGACCGGGAAG
                            | |  ||  ||     ||   ||||  |   | | |||||  | | |||  || ||| | ||    |||||| || || ||||| ||||| ||||||||  | ||| | || ||||| ||||||||||| |||||||| || ||| ||||||||||||| ||||| |||
gtaagtgcagcttatgttgctcctcgtcatggcgccccttcgtgttaattttacgtaagaaatattctgacgtatacaattttgtccgtaaatgcagGGCGGTGACGTCCGCAGGATCGTCGGAGCTGATCGCATTTTCCTCGCTCTGCACGTATGATATCTACCGCACCTACGTCAACCCCAAGGCCACCGGCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169053616|gb|FE462826.1|FE462826
EST:     GCTCTCATGGGAAACAGTGGTGCCATCCTACTGCTCACCATGCTCTTCAT                         GGNCGTCACCTCCGCGGGATCCTCGGAGCTCGT
genomic: GCTCTCATGGGAAACAGTGGTGCCATCCTACTGCTCACCATGCTCTTCATgtacgtagct ... gttctaccagGGCCGTCACCTCCGCGGGATCCTCGGAGCTCGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttctcttccttctttatatctcacacattctcttttacgtttgtgttctaccagGGCCGTCACCTCCGCGGGATCCTCGGAGCTCGTAGCAGTGTCGTCGCTGTGCACGTATGACATCTACCGGACATACATCAACCCCAAGGCGACCGGGAAG
                  atctcac  putative branch site (score: 3)
                                              ttctacc  putative PPT
          ttctttatat  TA-rich tract