1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtacgcaaacctttctgtccagaaaaaaaaaaactattgctttaatttttatattttctcgtggattgcagATTTGTATTGTCTTGGGAGTGCTGCTAATGATTGTAGCTACTATTGGAGGCTTCAGAAATATCATCATGGATGCATCAACATACAAGTTTTATCAGTAGC
species | Selaginella moellendorffii |
transcript | EFJ25874 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGGCTGTTTACAAACCCAGAGTTTTCAGTCTTTCGTGGATGGCAAACTGG ATTTGTATTGTCTTGGGAGTGCTGCTAATGATTGTAGCTACTATTGGAGGCEST: gi|169109258|gb|FE512825.1|FE512825
genomic: TGGCTGTTTACAAACCCAGAGTTTTCAGTCTTTCGTGGATGGCAAACTGGgtacgcaaac ... tggattgcagATTTGTATTGTCTTGGGAGTGCTGCTAATGATTGTAGCTACTATTGGAGGC
EST: TGGCTGTTTACAAACCCAGAGTTTTCAGTCTTTCGTGGATGGCAAACTGG ATTTGTATTGTCTTGGGAGTGCTGCTAATGATTGTAGCTACTATTGGAGGCEST: gi|169107383|gb|FE509123.1|FE509123
genomic: TGGCTGTTTACAAACCCAGAGTTTTCAGTCTTTCGTGGATGGCAAACTGGgtacgcaaac ... tggattgcagATTTGTATTGTCTTGGGAGTGCTGCTAATGATTGTAGCTACTATTGGAGGC
EST: TGGCTGTTTACAAACCCAGAGTTTTCAGTCTTTCGTGGATGGCAAACTGG ATTTGTATTGTCTTGGGAGTGCTGCTAATGATTGTAGCTACTATTGGAGGCEST: gi|169100621|gb|FE502133.1|FE502133
genomic: TGGCTGTTTACAAACCCAGAGTTTTCAGTCTTTCGTGGATGGCAAACTGGgtacgcaaac ... tggattgcagATTTGTATTGTCTTGGGAGTGCTGCTAATGATTGTAGCTACTATTGGAGGC
EST: TGGCTGTTTACAAACCCAGAGTTTTCAGTCTTTCGTGGATGGCAAACTGG ATTTGTATTGTCTTGGGAGTGCTGCTAATGATTGTAGCTACTATTGGAGGCEST: gi|169045221|gb|FE451454.1|FE451454
genomic: TGGCTGTTTACAAACCCAGAGTTTTCAGTCTTTCGTGGATGGCAAACTGGgtacgcaaac ... tggattgcagATTTGTATTGTCTTGGGAGTGCTGCTAATGATTGTAGCTACTATTGGAGGC
EST: TGGCTGTTTACAAACCCAGAGTTTTCAGTCTTTCGTGGATGGCAAACTGG ATTTGTATTGTCTTGGGAGTGCTGCTAATGATTGTAGCTACTATTGGAGGCEST: gi|169053549|gb|FE463318.1|FE463318
genomic: TGGCTGTTTACAAACCCAGAGTTTTCAGTCTTTCGTGGATGGCAAACTGGgtacgcaaac ... tggattgcagATTTGTATTGTCTTGGGAGTGCTGCTAATGATTGTAGCTACTATTGGAGGC
EST: TGGCTGTTTACAAACCCAGAGTTTTCAGTCTTTCGTGGATGGCAAACTGG ATTTGTATTGTCTTGGGAGTGCTGCTAATGATTGTAGCTACTATTGGAGGCEST: gi|169111166|gb|FE511352.1|FE511352
genomic: TGGCTGTTTACAAACCCAGAGTTTTCAGTCTTTCGTGGATGGCAAACTGGgtacgcaaac ... tggattgcagATTTGTATTGTCTTGGGAGTGCTGCTAATGATTGTAGCTACTATTGGAGGC
EST: TGGCTGTTTACAAACCCAGAGTTTTCAGTCTTTCGTGGATGGCAAACTGG ATTTGTATTGTCTTGGGAGTGCTGCTAATGATTGTAGCTACTATTGGAGGCEST: gi|169083875|gb|FE492787.1|FE492787
genomic: TGGCTGTTTACAAACCCAGAGTTTTCAGTCTTTCGTGGATGGCAAACTGGgtacgcaaac ... tggattgcagATTTGTATTGTCTTGGGAGTGCTGCTAATGATTGTAGCTACTATTGGAGGC
EST: TGGCTGTTTACAAACCCAGAGTTTTCAGTCTTTCGTGGATGGCAAACTGG ATTTGTATTGTCTTGGGAGTGCTGCTAATGATTGTAGCTACTATTGGAGGCEST: gi|169024838|gb|FE435504.1|FE435504
genomic: TGGCTGTTTACAAACCCAGAGTTTTCAGTCTTTCGTGGATGGCAAACTGGgtacgcaaac ... tggattgcagATTTGTATTGTCTTGGGAGTGCTGCTAATGATTGTAGCTACTATTGGAGGC
EST: TGGCTGTTTACAAACCCAGAGTTTTCAGTCTTTCGTGGATGGCAAACTGG ATTTGTATTGTCTTGGGAGTGCTGCTAATGATTGTAGCTACTATTGGAGGCEST: gi|169100468|gb|FE502682.1|FE502682
genomic: TGGCTGTTTACAAACCCAGAGTTTTCAGTCTTTCGTGGATGGCAAACTGGgtacgcaaac ... tggattgcagATTTGTATTGTCTTGGGAGTGCTGCTAATGATTGTAGCTACTATTGGAGGC
EST: TGGCTGTTTACAAACCCAGAGTTTTCAGTCTTTCGTGGATGGCAAACTGG ATTTGTATTGTCTTGGGAGTGCTGCTAATGATTGTAGCTACTATTGGAGGCEST: gi|169061780|gb|FE470698.1|FE470698
genomic: TGGCTGTTTACAAACCCAGAGTTTTCAGTCTTTCGTGGATGGCAAACTGGgtacgcaaac ... tggattgcagATTTGTATTGTCTTGGGAGTGCTGCTAATGATTGTAGCTACTATTGGAGGC
EST: TGGCTGTTTACAAACCCAGAGTTTTCAGTCTTTCGTGGATGGCAAACTGG ATTTGTATTGTCTTGGGAGTGCTGCTAATGATTGTAGCTACTATTGGAGGCEST: gi|169072770|gb|FE484348.1|FE484348
genomic: TGGCTGTTTACAAACCCAGAGTTTTCAGTCTTTCGTGGATGGCAAACTGGgtacgcaaac ... tggattgcagATTTGTATTGTCTTGGGAGTGCTGCTAATGATTGTAGCTACTATTGGAGGC
EST: TGGCTGTTTACAAACCCAGAGTTTTCAGTCTTTCGTGGATGGCAAACTGG ATTTGTATTGTCTTGGGAGTGCTGCTAATGATTGTAGCTACTATTGGAGGC
genomic: TGGCTGTTTACAAACCCAGAGTTTTCAGTCTTTCGTGGATGGCAAACTGGgtacgcaaac ... tggattgcagATTTGTATTGTCTTGGGAGTGCTGCTAATGATTGTAGCTACTATTGGAGGC
gtccagaaaaaaaaaaactattgctttaatttttatattttctcgtggattgcagATTTGTATTGTCTTGGGAGTGCTGCTAATGATTGTAGCTACTATTGGAGGCTTCAGAAATATCATCATGGATGCATCAACATACAAGTTTTATCAGTAGC
ctttaat putative branch site (score: 31)
ttttctcgt putative PPT
aaaaaaaaaaactatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgcaaacctttctgtccagaaaaaaaaaaactattgctttaatttttatattttctcgtggattgcagATTTGTATTGTCTTGGGAGTGCTGCTAATGATTGTAGCTACTATTGGAGGCTTCAGAAATATCATCATGGATGCATCAACATACAAGTTTTATCAGTAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA