Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaaaaacggcctctttatgtctattgaagATTTTCTTTGTTTGCAGGAGTTTGAGAACGACTCGGCTTCCAGCCAGATATTTTGGCTATTGA

Basic information

species Selaginella moellendorffii
transcript EFJ25643
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ25643 (Selaginella moellendorffii), 3'ss of exon 7
lower sequence: GLYMA13G23850.1 (Glycine max), 3'ss of exon 6
--------------------------------------gtaagaaaaacggcctctttatg--tctattgaagATTTTCTT--TGTTTG--CAGGAGTTTGAGAACGACTCGGCTTCCAGCCAGATATTTTGGCTATTGA------------------------------------------------------
                                      | | |  || |    | ||  ||  |||||| |    |||  |  ||||||   |||| |||||| || |||| || |||||||||||||||||||||||||                                                      
gtgaggagaatctattctttgacattgctgttctttaagcatgctaatcttttttttcttgcttctatttactccttttatgttgtttgaatagGAATTTGAGGACAACTCTGCCTCCAGCCAGATATTTTGGCTATTGAAAGAAAGTGAGCTAACTCCCAGTAATGCCAATATATTGGATGGTCGATATGCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaagaaaaacggcctctttatgtctattgaagATTTTCTTTGTTTGCAGGAGTTTGAGAACGACTCGGCTTCCAGCCAGATATTTTGGCTATTGA
                                                                  taagaaaaa  TA-rich tract