Sequence
atgc intronic sequence ATGC exonic sequencegttacttccgaggcaagtgataaacgagctgagaattccttatatgcttctgtccgtctcctttctccacagTTTAATCACATCAATGGTCTGGAGCTGGTGTGCCGAGCACATCAACTAGTACAGGAGGGATTGAAGTACATGTTTCCAGATAAAAGCCTTGTCACG
Basic information
species | Selaginella moellendorffii |
transcript | EFJ25636 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: EFJ25636 (Selaginella moellendorffii), 3'ss of exon 7
lower sequence: PP1S207_36V6.1 (Physcomitrella patens), 3'ss of exon 7
---------------------------gt-tacttccgaggcaagtgataaacgagctgagaattccttatatgcttctgtccgtctcctttctccacagTTTAATCACATCAATGGTCTGGAGCTGGTGTGCCGAGCACATCAACTAGTACAGGAGGGATTGAAGTACATGTTTCCAGATAAAAGCCTTGTCACG
|| || || || |||| | || | | |||| | || | | ||||| |||||||| || || ||||||| || ||||| || |||||| |||| || ||||||||||||||||||||||| || ||| | |||||||||
tctaatgctagtgtatgtgttcgtattgtgtaaaccctctgctttagatatttagtttaagtttcgtgtctatgttgctctgatgtgggtagtattgcagTTCAATCACATAAACGGATTGGAGCTTGTATGCCGTGCGCATCAATTAGTTCAAGAGGGATTGAAGTACATGTTTCCTGACAAAGGACTTGTCACG
upper sequence: EFJ25636 (Selaginella moellendorffii), 3'ss of exon 7
lower sequence: PP1S31_220V6.1 (Physcomitrella patens), 3'ss of exon 7
-------------------------gttacttccgaggcaagtgataaa-cgagctgagaattccttatatgcttctgtccgt--ctcctttctccacagTTTAATCACATCAATGGTCTGGAGCTGGTGTGCCGAGCACATCAACTAGTACAGGAGGGATTGAAGTACATGTTTCCAGATAAAAGCCTTGTCACG
| | || || || | | | || | | | | |||| | ||| | | ||||||||||| || || || ||||||| || || || || |||||||||||||| |||||| ||||||| |||||||| || ||| | |||||||||
tttcgtttagtgtaaggctttctgtttcattttagacttaacttgcaggtcaagatatatcgttatgctgtgctgataaacgttgttggtagtattgcagTTTAATCATATAAACGGATTGGAGCTTGTTTGTCGTGCTCATCAACTAGTACAAGAGGGACTGAAGTATATGTTTCCTGACAAAGGACTTGTCACG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgataaacgagctgagaattccttatatgcttctgtccgtctcctttctccacagTTTAATCACATCAATGGTCTGGAGCTGGTGTGCCGAGCACATCAACTAGTACAGGAGGGATTGAAGTACATGTTTCCAGATAAAAGCCTTGTCACG
tgcttctgtccgtctc CT-rich tract
ttatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttacttccgaggcaagtgataaacgagctgagaattccttatatgcttctgtccgtctcctttctccacagTTTAATCACATCAATGGTCTGGAGCTGGTGTGCCGAGCACATCAACTAGTACAGGAGGGATTGAAGTACATGTTTCCAGATAAAAGCCTTGTCACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG